Variant report

Variant	rs10001302
Chromosome Location	chr4:78262968-78262969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 236 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs10000241	0.80[EUR][1000 genomes]
rs10001554	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10003385	0.80[EUR][1000 genomes]
rs10003395	0.83[EUR][1000 genomes]
rs10003480	0.80[EUR][1000 genomes]
rs10006535	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10006656	0.80[EUR][1000 genomes]
rs10007003	0.83[EUR][1000 genomes]
rs10009287	0.80[EUR][1000 genomes]
rs10010146	0.80[EUR][1000 genomes]
rs10011281	0.80[EUR][1000 genomes]
rs10011734	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10013307	0.80[EUR][1000 genomes]
rs10014177	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10014353	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10014372	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10015460	0.81[AFR][1000 genomes]
rs10016564	0.80[EUR][1000 genomes]
rs10016991	0.80[EUR][1000 genomes]
rs10017089	0.80[EUR][1000 genomes]
rs10017165	0.80[EUR][1000 genomes]
rs10017537	0.83[EUR][1000 genomes]
rs10017551	0.83[EUR][1000 genomes]
rs10017552	0.83[EUR][1000 genomes]
rs10017634	0.83[EUR][1000 genomes]
rs10018013	0.80[EUR][1000 genomes]
rs10018841	0.80[EUR][1000 genomes]
rs10018950	0.80[EUR][1000 genomes]
rs10022709	0.80[EUR][1000 genomes]
rs10023087	0.80[EUR][1000 genomes]
rs10024574	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10025487	0.80[EUR][1000 genomes]
rs10026063	0.80[EUR][1000 genomes]
rs10026632	0.80[EUR][1000 genomes]
rs10027556	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10029187	0.80[EUR][1000 genomes]
rs10031446	0.80[EUR][1000 genomes]
rs10155431	0.80[EUR][1000 genomes]
rs10440383	0.80[EUR][1000 genomes]
rs10518169	0.80[EUR][1000 genomes]
rs10518172	0.80[EUR][1000 genomes]
rs10518173	0.80[EUR][1000 genomes]
rs11536332	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1160044	0.80[EUR][1000 genomes]
rs1160276	0.80[EUR][1000 genomes]
rs12642870	0.80[EUR][1000 genomes]
rs12643064	0.80[EUR][1000 genomes]
rs12643399	0.80[EUR][1000 genomes]
rs12643786	0.80[EUR][1000 genomes]
rs12645407	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12645430	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12645787	0.80[EUR][1000 genomes]
rs12645827	0.80[EUR][1000 genomes]
rs12646196	0.80[EUR][1000 genomes]
rs12650116	0.80[EUR][1000 genomes]
rs12650778	0.80[EUR][1000 genomes]
rs1541661	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1541662	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17002493	0.80[EUR][1000 genomes]
rs17394817	0.80[EUR][1000 genomes]
rs17395041	0.80[EUR][1000 genomes]
rs17395298	0.80[EUR][1000 genomes]
rs17395748	0.80[EUR][1000 genomes]
rs17395769	0.80[EUR][1000 genomes]
rs17396195	0.80[EUR][1000 genomes]
rs17396202	0.80[EUR][1000 genomes]
rs17396361	0.80[EUR][1000 genomes]
rs17396596	0.80[EUR][1000 genomes]
rs17396701	0.80[EUR][1000 genomes]
rs17399165	0.80[EUR][1000 genomes]
rs17399199	0.80[EUR][1000 genomes]
rs17400808	0.81[EUR][1000 genomes]
rs17402068	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17402277	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17410608	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17410664	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17410861	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1862356	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1988614	0.80[EUR][1000 genomes]
rs2007495	0.80[EUR][1000 genomes]
rs2007496	0.80[EUR][1000 genomes]
rs2042229	0.80[EUR][1000 genomes]
rs2042230	0.80[EUR][1000 genomes]
rs2059102	0.80[EUR][1000 genomes]
rs2059103	0.80[EUR][1000 genomes]
rs2059104	0.80[EUR][1000 genomes]
rs2059105	0.80[EUR][1000 genomes]
rs2059106	0.80[EUR][1000 genomes]
rs2059108	0.80[EUR][1000 genomes]
rs2080977	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2080978	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2080979	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2080980	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2098653	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2098654	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2194116	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2194117	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2194126	0.80[EUR][1000 genomes]
rs2194127	0.80[EUR][1000 genomes]
rs2194128	0.80[EUR][1000 genomes]
rs2194129	0.80[EUR][1000 genomes]
rs2194130	0.80[EUR][1000 genomes]
rs28409053	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28440089	0.80[EUR][1000 genomes]
rs28458306	0.80[EUR][1000 genomes]
rs28482007	0.80[EUR][1000 genomes]
rs28522343	0.80[EUR][1000 genomes]
rs28523977	0.81[AMR][1000 genomes]
rs28528846	0.80[EUR][1000 genomes]
rs28563974	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28577247	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28581617	0.80[EUR][1000 genomes]
rs28605209	0.80[EUR][1000 genomes]
rs28629307	0.80[EUR][1000 genomes]
rs28653483	0.80[EUR][1000 genomes]
rs2866045	0.80[EUR][1000 genomes]
rs2866050	0.80[EUR][1000 genomes]
rs28665694	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28696354	0.83[EUR][1000 genomes]
rs28701154	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28713409	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28720869	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28726671	0.80[EUR][1000 genomes]
rs28733036	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28740917	0.81[AFR][1000 genomes]
rs28741683	0.80[EUR][1000 genomes]
rs28764902	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28765524	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28794557	0.80[EUR][1000 genomes]
rs28800921	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28804728	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28816218	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28827589	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28832364	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28838641	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28840788	0.83[EUR][1000 genomes]
rs28851267	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28854571	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28860491	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28865902	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28869537	0.80[EUR][1000 genomes]
rs28873235	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28882408	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs28894736	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2903169	0.80[EUR][1000 genomes]
rs34386122	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34803449	0.80[EUR][1000 genomes]
rs36117998	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3902526	0.80[EUR][1000 genomes]
rs4241615	0.80[EUR][1000 genomes]
rs4241616	0.80[EUR][1000 genomes]
rs4241617	0.80[EUR][1000 genomes]
rs4241618	0.80[EUR][1000 genomes]
rs4241619	0.80[EUR][1000 genomes]
rs4273491	0.80[EUR][1000 genomes]
rs4321659	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4330372	0.80[EUR][1000 genomes]
rs4412015	0.80[EUR][1000 genomes]
rs4464596	0.80[EUR][1000 genomes]
rs4484325	0.80[EUR][1000 genomes]
rs4529080	0.80[EUR][1000 genomes]
rs4608831	0.80[EUR][1000 genomes]
rs4859479	0.80[EUR][1000 genomes]
rs4859482	0.80[EUR][1000 genomes]
rs4859483	0.80[EUR][1000 genomes]
rs4859484	0.80[EUR][1000 genomes]
rs4859490	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859491	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859764	0.80[EUR][1000 genomes]
rs4859765	0.80[EUR][1000 genomes]
rs4859768	0.80[EUR][1000 genomes]
rs4859770	0.80[EUR][1000 genomes]
rs4859772	0.80[EUR][1000 genomes]
rs4859776	0.80[EUR][1000 genomes]
rs4859807	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859808	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859809	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859810	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859813	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4859814	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859815	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4859818	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56211902	0.80[EUR][1000 genomes]
rs57044172	0.80[EUR][1000 genomes]
rs57123831	0.80[EUR][1000 genomes]
rs57593446	0.80[EUR][1000 genomes]
rs58303783	0.80[EUR][1000 genomes]
rs58481193	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59553748	0.80[EUR][1000 genomes]
rs59680999	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60307733	0.80[EUR][1000 genomes]
rs61687942	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6812863	0.83[EUR][1000 genomes]
rs6816489	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6817367	0.82[EUR][1000 genomes]
rs6818016	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6818028	0.83[EUR][1000 genomes]
rs6818202	0.83[EUR][1000 genomes]
rs6843119	0.83[EUR][1000 genomes]
rs723972	0.80[EUR][1000 genomes]
rs72856841	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72856846	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72856847	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72856863	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72866448	0.80[EUR][1000 genomes]
rs72866480	0.80[EUR][1000 genomes]
rs7375828	0.80[EUR][1000 genomes]
rs7375829	0.80[EUR][1000 genomes]
rs7375834	0.80[EUR][1000 genomes]
rs7376348	0.80[EUR][1000 genomes]
rs7376994	0.80[EUR][1000 genomes]
rs73827312	0.81[AFR][1000 genomes]
rs73829714	0.80[EUR][1000 genomes]
rs7435398	0.80[EUR][1000 genomes]
rs888982	0.80[EUR][1000 genomes]
rs888983	0.80[EUR][1000 genomes]
rs918496	0.80[EUR][1000 genomes]
rs918497	0.80[EUR][1000 genomes]
rs9307261	0.80[EUR][1000 genomes]
rs933657	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9991175	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9992404	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9994215	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9996094	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9997026	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006017	chr4:78139780-78312974	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003383	chr4:78170317-78265687	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1002683	chr4:78170317-78281331	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1010450	chr4:78182037-78317840	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004824	chr4:78188691-78312974	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1000447	chr4:78191608-78291173	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3468255	chr4:78237484-78277631	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv5935	chr4:78237568-78277734	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3468256	chr4:78237627-78277552	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1845782	chr4:78237955-78321598	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78259000-78263000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:78259200-78263000	Weak transcription	NHEK	skin

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