Variant report

Variant	rs10001606
Chromosome Location	chr5:59720396-59720397
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10004305	0.91[ASN][1000 genomes]
rs10006660	0.91[ASN][1000 genomes]
rs10020703	0.91[ASN][1000 genomes]
rs10028215	0.91[ASN][1000 genomes]
rs10028729	0.91[ASN][1000 genomes]
rs10030160	0.91[ASN][1000 genomes]
rs10030186	0.92[ASN][1000 genomes]
rs10030467	0.92[ASN][1000 genomes]
rs10030759	0.91[ASN][1000 genomes]
rs10033137	0.91[ASN][1000 genomes]
rs1027447	0.95[ASN][1000 genomes]
rs1027449	0.95[ASN][1000 genomes]
rs11727770	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11730025	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332067	0.91[ASN][1000 genomes]
rs13107007	0.93[ASN][1000 genomes]
rs13108822	0.91[ASN][1000 genomes]
rs13111617	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13118276	0.95[ASN][1000 genomes]
rs13132231	0.93[ASN][1000 genomes]
rs13141571	0.95[ASN][1000 genomes]
rs13143325	0.95[ASN][1000 genomes]
rs13435277	0.94[ASN][1000 genomes]
rs1390747	0.91[ASN][1000 genomes]
rs1496585	0.93[ASN][1000 genomes]
rs1496586	0.93[ASN][1000 genomes]
rs1496587	0.93[ASN][1000 genomes]
rs1496588	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1496598	0.92[ASN][1000 genomes]
rs1496607	0.95[ASN][1000 genomes]
rs1542823	0.92[ASN][1000 genomes]
rs17003289	0.93[ASN][1000 genomes]
rs17003293	0.95[ASN][1000 genomes]
rs17003294	0.95[ASN][1000 genomes]
rs17470289	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28361383	0.95[ASN][1000 genomes]
rs28449192	0.95[ASN][1000 genomes]
rs28473345	0.95[ASN][1000 genomes]
rs28488385	0.95[ASN][1000 genomes]
rs28494791	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28505110	0.91[ASN][1000 genomes]
rs28545653	0.95[ASN][1000 genomes]
rs28570979	0.95[ASN][1000 genomes]
rs28651081	0.95[ASN][1000 genomes]
rs2867447	0.93[ASN][1000 genomes]
rs2867450	0.94[ASN][1000 genomes]
rs2867451	0.94[ASN][1000 genomes]
rs2867452	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2867453	0.88[ASN][1000 genomes]
rs2867454	0.88[ASN][1000 genomes]
rs28704649	0.95[ASN][1000 genomes]
rs28721400	0.95[ASN][1000 genomes]
rs28725393	0.95[ASN][1000 genomes]
rs28739412	0.95[ASN][1000 genomes]
rs35150477	0.95[ASN][1000 genomes]
rs35520641	0.95[ASN][1000 genomes]
rs35702927	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3749488	0.95[ASN][1000 genomes]
rs3762843	0.90[ASN][1000 genomes]
rs3792608	0.95[ASN][1000 genomes]
rs4453958	0.91[ASN][1000 genomes]
rs55684284	0.94[ASN][1000 genomes]
rs55744800	0.94[ASN][1000 genomes]
rs59249633	0.94[ASN][1000 genomes]
rs59857077	0.95[ASN][1000 genomes]
rs60285643	0.94[ASN][1000 genomes]
rs60520656	0.91[ASN][1000 genomes]
rs62310262	0.93[ASN][1000 genomes]
rs62310263	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62310266	0.94[ASN][1000 genomes]
rs62310267	0.90[ASN][1000 genomes]
rs62310269	0.94[ASN][1000 genomes]
rs62310270	0.94[ASN][1000 genomes]
rs62310271	0.90[ASN][1000 genomes]
rs62310273	0.95[ASN][1000 genomes]
rs62310274	0.95[ASN][1000 genomes]
rs62310275	0.95[ASN][1000 genomes]
rs62310307	0.91[ASN][1000 genomes]
rs62310308	0.91[ASN][1000 genomes]
rs62310309	0.88[ASN][1000 genomes]
rs62310310	0.87[ASN][1000 genomes]
rs6533730	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67201837	0.94[ASN][1000 genomes]
rs67217470	0.95[ASN][1000 genomes]
rs67993554	0.95[ASN][1000 genomes]
rs6829018	0.92[ASN][1000 genomes]
rs6844368	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71611022	0.88[ASN][1000 genomes]
rs7669587	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7675424	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7696362	0.94[ASN][1000 genomes]
rs7697796	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs931606	0.92[ASN][1000 genomes]
rs9685861	0.92[ASN][1000 genomes]
rs9996383	0.92[ASN][1000 genomes]
rs9997583	0.92[ASN][1000 genomes]
rs9999496	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1033344	chr5:59710033-59773467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv598289	chr5:59714130-59757242	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv968178	chr5:59715355-59730443	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	nsv1026008	chr5:59717732-59761680	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1030689	chr5:59717732-59765065	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1029577	chr5:59717732-59771723	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv1019718	chr5:59717732-59772485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1020997	chr5:59717732-59773467	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv2763904	chr5:59717744-59773479	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59717000-59730000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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