Variant report

Variant	rs10001693
Chromosome Location	chr4:173933660-173933661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000164105	Chromatin interaction
ENSG00000245213	Chromatin interaction
ENSG00000109586	Chromatin interaction
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10017142	0.85[AFR][1000 genomes]
rs4696041	0.82[AFR][1000 genomes]
rs55735862	0.90[EUR][1000 genomes]
rs56301008	0.90[EUR][1000 genomes]
rs57729723	0.93[AFR][1000 genomes]
rs59260743	0.90[EUR][1000 genomes]
rs73870347	0.90[EUR][1000 genomes]
rs7659819	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173920600-173942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:173923400-173934800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:173925400-173934800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:173928600-173934800	Weak transcription	Stomach Mucosa	stomach
6	chr4:173931200-173934200	Weak transcription	Hela-S3	cervix
7	chr4:173933400-173933800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr4:173933400-173936000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:173933600-173936600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:173933600-173936600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:173933600-173937000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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