Variant report

Variant	rs10017142
Chromosome Location	chr4:173950241-173950242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10001693	0.85[AFR][1000 genomes]
rs57729723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836069	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs7659819	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173944600-173955600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:173949400-173950800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:173949400-173951600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:173950000-173950400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:173950000-173950600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:173950000-173950600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:173950000-173951400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:173950200-173950800	Enhancers	Stomach Mucosa	stomach
9	chr4:173950200-173951400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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