Variant report

Variant	rs10001859
Chromosome Location	chr4:56203424-56203425
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11133375	0.80[EUR][1000 genomes]
rs11727256	0.81[ASN][1000 genomes]
rs11730275	0.80[ASN][1000 genomes]
rs12650678	0.81[EUR][1000 genomes]
rs13105055	0.81[ASN][1000 genomes]
rs13124164	0.82[EUR][1000 genomes]
rs1985606	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2063577	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34157065	0.81[ASN][1000 genomes]
rs4864982	0.82[EUR][1000 genomes]
rs6813878	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6835891	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7664100	0.82[EUR][1000 genomes]
rs7668085	0.81[ASN][1000 genomes]
rs9790808	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56201800-56203600	Flanking Active TSS	Dnd41	blood
2	chr4:56202200-56203600	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:56202800-56203800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:56203000-56204200	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links