Variant report

Variant	rs6813878
Chromosome Location	chr4:56208064-56208065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10001607	0.83[EUR][1000 genomes]
rs10001859	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11133375	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11727256	1.00[ASN][1000 genomes]
rs11730275	0.99[ASN][1000 genomes]
rs12650678	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13105055	1.00[ASN][1000 genomes]
rs13124164	0.95[EUR][1000 genomes]
rs1985606	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063577	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34157065	1.00[ASN][1000 genomes]
rs4864982	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6835891	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6854287	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7664100	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7668085	1.00[ASN][1000 genomes]
rs7672248	0.82[EUR][1000 genomes]
rs9790808	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56203600-56210400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:56205800-56208200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:56206200-56211800	Weak transcription	Adipose Nuclei	Adipose
4	chr4:56206600-56211200	Weak transcription	Stomach Mucosa	stomach
5	chr4:56206800-56211200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:56206800-56211600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:56207000-56211200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:56207600-56208200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:56207600-56208200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:56207600-56211800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:56207800-56211800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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