Variant report

Variant	rs10002534
Chromosome Location	chr4:94276201-94276202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10000895	1.00[ASN][1000 genomes]
rs10000957	1.00[ASN][1000 genomes]
rs10001043	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001180	0.86[ASN][1000 genomes]
rs10001209	1.00[ASN][1000 genomes]
rs10002068	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003805	0.80[EUR][1000 genomes]
rs10008521	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10010189	0.95[EUR][1000 genomes]
rs10012783	0.82[EUR][1000 genomes]
rs10015087	0.82[EUR][1000 genomes]
rs10015888	1.00[ASN][1000 genomes]
rs10019237	0.80[EUR][1000 genomes]
rs10022114	0.82[EUR][1000 genomes]
rs10023182	1.00[ASN][1000 genomes]
rs10025408	0.81[EUR][1000 genomes]
rs10034637	0.82[EUR][1000 genomes]
rs11932967	1.00[ASN][1000 genomes]
rs11934089	1.00[ASN][1000 genomes]
rs11935918	1.00[ASN][1000 genomes]
rs11936994	1.00[ASN][1000 genomes]
rs11937272	0.82[EUR][1000 genomes]
rs11938945	1.00[ASN][1000 genomes]
rs11940699	1.00[ASN][1000 genomes]
rs11941777	1.00[ASN][1000 genomes]
rs11945966	1.00[ASN][1000 genomes]
rs1485022	0.95[EUR][1000 genomes]
rs1485024	0.95[EUR][1000 genomes]
rs17020435	1.00[ASN][1000 genomes]
rs17020445	1.00[ASN][1000 genomes]
rs17020463	1.00[ASN][1000 genomes]
rs17020544	0.82[EUR][1000 genomes]
rs17020556	0.82[EUR][1000 genomes]
rs17020658	0.80[EUR][1000 genomes]
rs17272388	0.95[EUR][1000 genomes]
rs17330789	0.95[EUR][1000 genomes]
rs1905707	0.82[EUR][1000 genomes]
rs1905708	0.82[EUR][1000 genomes]
rs1905709	0.82[EUR][1000 genomes]
rs1948018	0.82[EUR][1000 genomes]
rs1994252	0.82[EUR][1000 genomes]
rs2082553	0.95[EUR][1000 genomes]
rs2099383	1.00[ASN][1000 genomes]
rs2117126	1.00[ASN][1000 genomes]
rs2117127	1.00[ASN][1000 genomes]
rs2163959	1.00[ASN][1000 genomes]
rs28431857	1.00[ASN][1000 genomes]
rs28476525	1.00[ASN][1000 genomes]
rs28480348	0.82[EUR][1000 genomes]
rs28578392	0.80[EUR][1000 genomes]
rs28588694	1.00[ASN][1000 genomes]
rs28642854	1.00[ASN][1000 genomes]
rs28677017	1.00[ASN][1000 genomes]
rs28683046	0.82[EUR][1000 genomes]
rs28715682	0.91[EUR][1000 genomes]
rs28768784	0.82[EUR][1000 genomes]
rs2904481	1.00[ASN][1000 genomes]
rs6532404	1.00[ASN][1000 genomes]
rs6820920	0.96[EUR][1000 genomes]
rs6826128	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827494	1.00[ASN][1000 genomes]
rs6827657	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827992	0.94[ASN][1000 genomes]
rs6854722	0.96[EUR][1000 genomes]
rs72884566	0.95[EUR][1000 genomes]
rs72886217	0.89[EUR][1000 genomes]
rs733941	0.91[EUR][1000 genomes]
rs7657634	1.00[ASN][1000 genomes]
rs7672467	1.00[ASN][1000 genomes]
rs7672627	1.00[ASN][1000 genomes]
rs7681947	1.00[ASN][1000 genomes]
rs7696884	1.00[ASN][1000 genomes]
rs919865	1.00[ASN][1000 genomes]
rs919866	1.00[ASN][1000 genomes]
rs9307124	0.80[EUR][1000 genomes]
rs9790383	0.82[EUR][1000 genomes]
rs9992229	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2830401	chr4:94141655-94450106	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3584808	chr4:94156602-94559327	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv879616	chr4:94190621-94289256	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv533846	chr4:94264488-94462921	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94274000-94276400	Weak transcription	Fetal Intestine Large	intestine
2	chr4:94275000-94276400	Weak transcription	Fetal Intestine Small	intestine
3	chr4:94276200-94277200	Enhancers	Stomach Mucosa	stomach

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