Variant report

Variant	rs11938945
Chromosome Location	chr4:94288068-94288069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10000895	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10000957	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001043	1.00[ASN][1000 genomes]
rs10001180	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10001209	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10002068	1.00[ASN][1000 genomes]
rs10002534	1.00[ASN][1000 genomes]
rs10008521	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012194	0.81[EUR][1000 genomes]
rs10015888	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023182	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025149	0.83[EUR][1000 genomes]
rs11932967	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934089	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935918	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936994	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940699	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941449	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11941777	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945966	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13328057	0.83[EUR][1000 genomes]
rs1485019	0.83[EUR][1000 genomes]
rs17020435	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020445	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020463	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948017	0.81[EUR][1000 genomes]
rs1994253	0.83[EUR][1000 genomes]
rs2099383	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2117126	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2117127	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163959	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431857	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28476525	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588694	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28642854	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28677017	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904481	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532404	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826128	1.00[ASN][1000 genomes]
rs6827494	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827657	1.00[ASN][1000 genomes]
rs6827992	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72884535	0.83[EUR][1000 genomes]
rs7657634	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672467	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672627	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681947	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694361	0.83[EUR][1000 genomes]
rs7696884	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919865	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919866	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307123	0.83[EUR][1000 genomes]
rs9998583	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2830401	chr4:94141655-94450106	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3584808	chr4:94156602-94559327	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv879616	chr4:94190621-94289256	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv533846	chr4:94264488-94462921	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94286800-94288200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:94286800-94288800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:94287000-94288600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:94287600-94288200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:94287600-94290400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:94287800-94289000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:94288000-94288600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:94288000-94290600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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