Variant report

Variant	rs10002709
Chromosome Location	chr4:151156761-151156762
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151151694..151154346-chr4:151156104..151158650,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11099756	0.85[JPT][hapmap]
rs11099757	0.95[JPT][hapmap]
rs12374344	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151138800-151169800	Weak transcription	Spleen	Spleen
2	chr4:151139600-151177400	Weak transcription	Brain Substantia Nigra	brain
3	chr4:151139600-151181000	Weak transcription	Brain Angular Gyrus	brain
4	chr4:151140000-151175000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:151142200-151172200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:151146200-151169200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:151146400-151157400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:151146400-151157400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:151146400-151165600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:151146600-151165600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:151150800-151156800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:151150800-151156800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:151150800-151157800	Weak transcription	Fetal Kidney	kidney
14	chr4:151150800-151170800	Weak transcription	Pancreas	Pancrea
15	chr4:151151400-151157200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:151151400-151158400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:151151800-151156800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:151151800-151165600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:151152000-151157000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:151152000-151157000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:151152000-151157200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:151152000-151160200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:151152400-151156800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:151152400-151176400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:151152800-151164200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:151153000-151156800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:151153000-151156800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:151153400-151156800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:151153600-151157000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:151153600-151164800	Weak transcription	Right Atrium	heart
31	chr4:151153800-151156800	Weak transcription	Fetal Heart	heart
32	chr4:151153800-151157000	Strong transcription	Fetal Brain Female	brain
33	chr4:151153800-151158400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr4:151154000-151157000	Weak transcription	HUVEC	blood vessel
35	chr4:151155000-151158000	Enhancers	NHDF-Ad	bronchial
36	chr4:151155000-151160400	Enhancers	NHLF	lung
37	chr4:151155200-151157400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:151155200-151157800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:151155200-151160600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr4:151155200-151161600	Genic enhancers	HSMM	muscle
41	chr4:151155400-151156800	Genic enhancers	A549	lung
42	chr4:151155600-151156800	Strong transcription	HSMMtube	muscle
43	chr4:151155600-151157000	Weak transcription	Ovary	ovary
44	chr4:151155600-151157400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
45	chr4:151156000-151157400	Enhancers	Fetal Brain Male	brain
46	chr4:151156000-151159200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:151156200-151156800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:151156200-151159200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:151156200-151160800	Weak transcription	Brain Anterior Caudate	brain
50	chr4:151156200-151173000	Weak transcription	Fetal Intestine Small	intestine

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