Variant report

Variant	rs11099756
Chromosome Location	chr4:151063917-151063918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10002709	0.85[JPT][hapmap]
rs10012983	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10857242	0.94[AFR][1000 genomes]
rs11099757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17631799	0.83[YRI][hapmap]
rs4438743	0.85[CEU][hapmap]
rs4513544	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6858003	0.85[YRI][hapmap]
rs72730355	0.94[AFR][1000 genomes]
rs72730358	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72730365	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72730387	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72730391	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72730393	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72732407	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs922122	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151038800-151070000	Weak transcription	Ovary	ovary
2	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:151049200-151074000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:151057800-151070600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:151061800-151069800	Weak transcription	Left Ventricle	heart
6	chr4:151061800-151071800	Weak transcription	Brain Anterior Caudate	brain
7	chr4:151062200-151064000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:151062800-151066800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:151062800-151067000	Weak transcription	HMEC	breast
10	chr4:151062800-151071800	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:151062800-151072000	Weak transcription	Aorta	Aorta
12	chr4:151063000-151066000	Weak transcription	Osteobl	bone
13	chr4:151063000-151066400	Weak transcription	NH-A	brain
14	chr4:151063000-151066600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:151063000-151070800	Weak transcription	HSMMtube	muscle
16	chr4:151063200-151066400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:151063200-151066400	Weak transcription	NHLF	lung
18	chr4:151063200-151066600	Weak transcription	NHEK	skin
19	chr4:151063200-151067200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:151063200-151070600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:151063400-151066400	Weak transcription	NHDF-Ad	bronchial
22	chr4:151063400-151066600	Weak transcription	HSMM	muscle
23	chr4:151063400-151070600	Weak transcription	Fetal Heart	heart
24	chr4:151063600-151066400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:151063600-151066400	Weak transcription	Hela-S3	cervix
26	chr4:151063600-151066800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:151063600-151070200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:151063800-151064000	Weak transcription	A549	lung
29	chr4:151063800-151065200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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