Variant report

Variant	rs6858003
Chromosome Location	chr4:151030964-151030965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10857242	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11099756	0.85[YRI][hapmap]
rs13146631	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2054271	1.00[ASW][hapmap]
rs4438743	0.83[CHB][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4513544	1.00[ASW][hapmap]
rs4835616	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6815799	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6846581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72730355	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72730358	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7658529	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7663626	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307868	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151012200-151035400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:151018000-151031800	Weak transcription	Brain Anterior Caudate	brain
3	chr4:151019400-151037000	Weak transcription	NHLF	lung
4	chr4:151019600-151037200	Weak transcription	HSMMtube	muscle
5	chr4:151020000-151034400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:151020200-151031200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:151021000-151035400	Weak transcription	HSMM	muscle
8	chr4:151021000-151037000	Weak transcription	Pancreas	Pancrea
9	chr4:151024800-151031400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:151027000-151032000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:151028400-151035400	Weak transcription	Osteobl	bone
12	chr4:151028600-151036600	Weak transcription	Fetal Heart	heart
13	chr4:151029800-151031000	Enhancers	NHDF-Ad	bronchial
14	chr4:151030000-151031400	Enhancers	Rectal Smooth Muscle	rectum
15	chr4:151030000-151031600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:151030200-151035800	Weak transcription	A549	lung
17	chr4:151030600-151031400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:151030800-151032200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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