Variant report

Variant	rs9307868
Chromosome Location	chr4:151030337-151030338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10857242	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13146631	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4438743	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4835616	0.86[AMR][1000 genomes]
rs6815799	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6846581	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6858003	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72730355	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72730358	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7658529	0.93[AMR][1000 genomes]
rs7663626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151012200-151035400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:151018000-151031800	Weak transcription	Brain Anterior Caudate	brain
3	chr4:151019400-151037000	Weak transcription	NHLF	lung
4	chr4:151019600-151037200	Weak transcription	HSMMtube	muscle
5	chr4:151020000-151034400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:151020200-151031200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:151021000-151035400	Weak transcription	HSMM	muscle
8	chr4:151021000-151037000	Weak transcription	Pancreas	Pancrea
9	chr4:151024800-151031400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:151027000-151032000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:151028400-151035400	Weak transcription	Osteobl	bone
12	chr4:151028600-151036600	Weak transcription	Fetal Heart	heart
13	chr4:151028800-151030800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:151029800-151031000	Enhancers	NHDF-Ad	bronchial
15	chr4:151030000-151030600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:151030000-151031400	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:151030000-151031600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:151030200-151030400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:151030200-151035800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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