Variant report

Variant	rs72730358
Chromosome Location	chr4:151058065-151058066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151057757..151060556-chr4:151069534..151071946,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10857242	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11099756	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11099757	0.81[AMR][1000 genomes]
rs4438743	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6815799	0.82[AMR][1000 genomes]
rs6846581	0.85[AMR][1000 genomes]
rs6858003	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72730355	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72730365	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72730387	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72732407	0.94[AFR][1000 genomes]
rs72965581	0.81[EUR][1000 genomes]
rs7663626	0.82[AMR][1000 genomes]
rs9307868	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151038800-151070000	Weak transcription	Ovary	ovary
2	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:151047400-151058200	Weak transcription	Left Ventricle	heart
4	chr4:151049200-151074000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:151051800-151062600	Weak transcription	Fetal Heart	heart
6	chr4:151053200-151062000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:151053600-151058200	Weak transcription	Brain Germinal Matrix	brain
8	chr4:151053800-151060400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:151054200-151060400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:151055000-151060400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:151055600-151058600	Weak transcription	Fetal Brain Female	brain
12	chr4:151056000-151058800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:151056200-151058400	Enhancers	Primary B cells from peripheral blood	blood
14	chr4:151056200-151058600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:151056200-151058600	Enhancers	NH-A	brain
16	chr4:151056800-151060400	Weak transcription	Brain Anterior Caudate	brain
17	chr4:151056800-151061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:151057000-151058800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:151057200-151058600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:151057200-151058600	Enhancers	HSMM	muscle
21	chr4:151057200-151060400	Weak transcription	Brain Substantia Nigra	brain
22	chr4:151057400-151058600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:151057600-151058200	Weak transcription	Right Atrium	heart
24	chr4:151057600-151058600	Enhancers	Osteobl	bone
25	chr4:151057600-151059000	Weak transcription	A549	lung
26	chr4:151057600-151060800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:151057800-151058400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:151057800-151060600	Weak transcription	NHDF-Ad	bronchial
29	chr4:151057800-151061400	Weak transcription	NHLF	lung
30	chr4:151057800-151070600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:151058000-151058400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:151058000-151058400	Weak transcription	HSMMtube	muscle
33	chr4:151058000-151060400	Weak transcription	HMEC	breast
34	chr4:151058000-151061400	Weak transcription	HUVEC	blood vessel

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