Variant report

Variant	rs72965581
Chromosome Location	chr4:151060515-151060516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:151057757..151060556-chr4:151069534..151071946,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10857242	0.80[EUR][1000 genomes]
rs3922818	0.84[AFR][1000 genomes]
rs4438743	0.80[EUR][1000 genomes]
rs4513543	0.84[AFR][1000 genomes]
rs59423365	1.00[AFR][1000 genomes]
rs72730355	0.80[EUR][1000 genomes]
rs72730358	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151038800-151070000	Weak transcription	Ovary	ovary
2	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:151049200-151074000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:151051800-151062600	Weak transcription	Fetal Heart	heart
5	chr4:151053200-151062000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:151056800-151061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:151057600-151060800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:151057800-151060600	Weak transcription	NHDF-Ad	bronchial
9	chr4:151057800-151061400	Weak transcription	NHLF	lung
10	chr4:151057800-151070600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:151058000-151061400	Weak transcription	HUVEC	blood vessel
12	chr4:151058400-151062400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:151058600-151060600	Weak transcription	HSMMtube	muscle
14	chr4:151058600-151060800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:151058600-151061400	Weak transcription	Left Ventricle	heart
16	chr4:151058600-151061600	Weak transcription	NH-A	brain
17	chr4:151058600-151062600	Weak transcription	Brain Germinal Matrix	brain
18	chr4:151058800-151060600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:151058800-151062200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:151059000-151062000	Enhancers	A549	lung
21	chr4:151059800-151060800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:151060400-151060600	Enhancers	Aorta	Aorta
23	chr4:151060400-151061000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr4:151060400-151061000	Enhancers	Brain Substantia Nigra	brain
25	chr4:151060400-151061000	Enhancers	HMEC	breast
26	chr4:151060400-151061200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:151060400-151061800	Enhancers	Brain Anterior Caudate	brain
28	chr4:151060400-151062000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:151060400-151062200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:151060400-151062200	Enhancers	Hela-S3	cervix
31	chr4:151060400-151062200	Enhancers	Osteobl	bone
32	chr4:151060400-151062400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:151060400-151062400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr4:151060400-151062800	Enhancers	Colon Smooth Muscle	Colon
35	chr4:151060400-151063400	Enhancers	HSMM	muscle

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