Variant report

Variant	rs4513544
Chromosome Location	chr4:151071601-151071602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151065674..151068783-chr4:151069402..151072348,3	MCF-7	breast:
2	chr4:151057757..151060556-chr4:151069534..151071946,2	MCF-7	breast:
3	chr4:151066204..151068081-chr4:151071216..151073291,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10012983	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10857242	0.82[AFR][1000 genomes]
rs11099756	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11099757	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2054271	1.00[ASW][hapmap]
rs4240359	0.90[CHB][hapmap];0.89[CHD][hapmap]
rs4411962	0.90[CHB][hapmap]
rs4438743	0.88[TSI][hapmap]
rs6830296	0.85[ASN][1000 genomes]
rs6858003	1.00[ASW][hapmap]
rs72730355	0.82[AFR][1000 genomes]
rs72730365	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72730387	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72730391	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72730393	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72732407	0.82[AFR][1000 genomes]
rs7655178	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151045200-151099000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:151049200-151074000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:151061800-151071800	Weak transcription	Brain Anterior Caudate	brain
4	chr4:151062800-151071800	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:151062800-151072000	Weak transcription	Aorta	Aorta
6	chr4:151064600-151080200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:151066400-151071800	Weak transcription	Fetal Stomach	stomach
8	chr4:151067400-151074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:151067800-151071800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:151067800-151074200	Weak transcription	HSMM	muscle
11	chr4:151068000-151074000	Weak transcription	Brain Substantia Nigra	brain
12	chr4:151069600-151075400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:151070000-151071800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:151070000-151072600	Enhancers	Ovary	ovary
15	chr4:151070200-151071800	Weak transcription	Left Ventricle	heart
16	chr4:151070400-151072200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:151070600-151072200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:151070600-151072600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:151070600-151072600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:151070600-151072600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr4:151070600-151072800	Enhancers	Brain Germinal Matrix	brain
22	chr4:151070800-151072000	Enhancers	HSMMtube	muscle
23	chr4:151070800-151074200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:151070800-151080600	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:151071000-151071800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:151071000-151072600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:151071000-151073600	Weak transcription	A549	lung
28	chr4:151071200-151072200	Weak transcription	Fetal Brain Male	brain
29	chr4:151071400-151071800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:151071400-151072200	Enhancers	Right Atrium	heart
31	chr4:151071400-151091400	Weak transcription	Osteobl	bone
32	chr4:151071600-151072600	Enhancers	Fetal Brain Female	brain
33	chr4:151071600-151072800	Enhancers	Fetal Heart	heart
34	chr4:151071600-151073600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr4:151071600-151080400	Weak transcription	NHLF	lung
36	chr4:151071600-151091600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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