Variant report

Variant	rs10002843
Chromosome Location	chr4:119608976-119608977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119608875..119611520-chr4:119620589..119622906,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11938970	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs58980398	0.90[AFR][1000 genomes]
rs60947885	0.90[AFR][1000 genomes]
rs73842212	0.81[AFR][1000 genomes]
rs73842215	1.00[AFR][1000 genomes]
rs73842217	1.00[AFR][1000 genomes]
rs73842219	1.00[AFR][1000 genomes]
rs73843457	1.00[AFR][1000 genomes]
rs7660432	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119607000-119644800	Weak transcription	Small Intestine	intestine
2	chr4:119607200-119609200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:119607200-119609200	Weak transcription	Lung	lung
4	chr4:119607200-119609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:119607200-119609400	Weak transcription	Gastric	stomach
6	chr4:119607200-119609400	Weak transcription	Spleen	Spleen
7	chr4:119607200-119610800	Weak transcription	Pancreas	Pancrea
8	chr4:119607200-119615800	Weak transcription	Esophagus	oesophagus
9	chr4:119607200-119659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:119607400-119609000	Weak transcription	Placenta	Placenta
11	chr4:119607400-119613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:119607600-119609000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr4:119607600-119609000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:119607600-119609000	Weak transcription	Left Ventricle	heart
15	chr4:119607600-119609200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:119607600-119609200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:119607600-119609200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr4:119607600-119609400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:119607600-119613000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:119607600-119615800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:119607800-119609000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:119607800-119609000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:119607800-119609000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:119607800-119609000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr4:119607800-119609000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr4:119607800-119609000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr4:119607800-119609000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr4:119607800-119609000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:119607800-119609000	Enhancers	Fetal Brain Male	brain
30	chr4:119607800-119609000	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:119607800-119609000	Weak transcription	Thymus	Thymus
32	chr4:119607800-119609200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr4:119607800-119609200	Weak transcription	Right Ventricle	heart
34	chr4:119607800-119610400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr4:119607800-119610400	Weak transcription	Fetal Kidney	kidney
36	chr4:119607800-119610600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:119607800-119610800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:119607800-119613200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:119607800-119615800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:119607800-119615800	Weak transcription	Psoas Muscle	Psoas
41	chr4:119607800-119618000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr4:119607800-119625600	Weak transcription	Aorta	Aorta
43	chr4:119607800-119693800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr4:119608000-119609000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr4:119608000-119609000	Enhancers	Colon Smooth Muscle	Colon
46	chr4:119608000-119609000	Enhancers	Duodenum Mucosa	Duodenum
47	chr4:119608000-119609000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr4:119608000-119609200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr4:119608000-119609200	Weak transcription	Fetal Intestine Large	intestine
50	chr4:119608000-119610400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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