Variant report

Variant	rs73843457
Chromosome Location	chr4:119607880-119607881
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119199307..119202288-chr4:119603050..119607934,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269893	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10002843	1.00[AFR][1000 genomes]
rs11938970	0.91[AFR][1000 genomes]
rs58980398	0.90[AFR][1000 genomes]
rs60947885	0.90[AFR][1000 genomes]
rs73842212	0.81[AFR][1000 genomes]
rs73842215	1.00[AFR][1000 genomes]
rs73842217	1.00[AFR][1000 genomes]
rs73842219	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv427693	chr4:119493919-119674742	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119606000-119608000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:119606000-119608200	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr4:119606000-119608400	Active TSS	Brain Germinal Matrix	brain
4	chr4:119606200-119608000	Active TSS	Ovary	ovary
5	chr4:119606200-119608600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:119606600-119608400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:119607000-119608000	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr4:119607000-119608000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr4:119607000-119644800	Weak transcription	Small Intestine	intestine
10	chr4:119607200-119608000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:119607200-119608000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr4:119607200-119608000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:119607200-119608000	Flanking Active TSS	Brain Hippocampus Middle	brain
14	chr4:119607200-119608000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr4:119607200-119608000	Flanking Active TSS	Colon Smooth Muscle	Colon
16	chr4:119607200-119608000	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr4:119607200-119608000	Flanking Active TSS	Fetal Lung	lung
18	chr4:119607200-119608000	Flanking Active TSS	Rectal Smooth Muscle	rectum
19	chr4:119607200-119608000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr4:119607200-119608000	Flanking Active TSS	HUVEC	blood vessel
21	chr4:119607200-119608000	Flanking Active TSS	Osteobl	bone
22	chr4:119607200-119608200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:119607200-119608200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr4:119607200-119608400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:119607200-119608400	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr4:119607200-119608600	Flanking Active TSS	Dnd41	blood
27	chr4:119607200-119609200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:119607200-119609200	Weak transcription	Lung	lung
29	chr4:119607200-119609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:119607200-119609400	Weak transcription	Gastric	stomach
31	chr4:119607200-119609400	Weak transcription	Spleen	Spleen
32	chr4:119607200-119610800	Weak transcription	Pancreas	Pancrea
33	chr4:119607200-119615800	Weak transcription	Esophagus	oesophagus
34	chr4:119607200-119659200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:119607400-119608000	Enhancers	Primary B cells from peripheral blood	blood
36	chr4:119607400-119608000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr4:119607400-119608000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:119607400-119608000	Flanking Active TSS	Fetal Stomach	stomach
39	chr4:119607400-119608000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
40	chr4:119607400-119608000	Flanking Active TSS	NH-A	brain
41	chr4:119607400-119608200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:119607400-119608200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr4:119607400-119608200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:119607400-119608200	Flanking Active TSS	GM12878-XiMat	blood
45	chr4:119607400-119608200	Flanking Active TSS	Hela-S3	cervix
46	chr4:119607400-119608200	Flanking Active TSS	HMEC	breast
47	chr4:119607400-119608400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:119607400-119608600	Enhancers	Stomach Mucosa	stomach
49	chr4:119607400-119609000	Weak transcription	Placenta	Placenta
50	chr4:119607400-119613200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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