Variant report

Variant	rs10003141
Chromosome Location	chr4:103626523-103626524
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10000705	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17033181	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2167456	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3974632	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3974634	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4648138	1.00[CEU][hapmap]
rs6857760	1.00[TSI][hapmap]
rs9991351	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1013963	chr4:103606672-103645082	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103547000-103658200	Weak transcription	Small Intestine	intestine
2	chr4:103553000-103651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:103553400-103651400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:103556200-103650400	Weak transcription	Pancreas	Pancrea
5	chr4:103571800-103633600	Weak transcription	HepG2	liver
6	chr4:103571800-103655800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:103572000-103640800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:103580000-103644000	Weak transcription	Aorta	Aorta
9	chr4:103580400-103640600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:103581200-103627000	Weak transcription	Gastric	stomach
11	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
12	chr4:103586000-103640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:103596200-103640600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:103606000-103626600	Weak transcription	Left Ventricle	heart
15	chr4:103608800-103644600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:103609200-103644000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:103609600-103628200	Weak transcription	Fetal Heart	heart
18	chr4:103609600-103633600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:103609600-103640200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:103609600-103664800	Weak transcription	Esophagus	oesophagus
21	chr4:103610000-103626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:103610000-103640600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:103611200-103634400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr4:103611800-103635200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:103611800-103638800	Weak transcription	Liver	Liver
26	chr4:103612000-103633800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:103612000-103633800	Weak transcription	Adipose Nuclei	Adipose
28	chr4:103612000-103644000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr4:103614800-103634000	Weak transcription	Fetal Intestine Large	intestine
30	chr4:103616600-103628200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:103617000-103640200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:103617800-103633600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:103618000-103632600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:103618000-103634000	Weak transcription	Fetal Lung	lung
35	chr4:103618400-103655800	Weak transcription	HSMM	muscle
36	chr4:103622600-103643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr4:103623600-103627400	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr4:103623600-103630000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr4:103623800-103633200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:103624200-103627000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr4:103624200-103627600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:103624400-103626600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr4:103624400-103633000	Weak transcription	Brain Angular Gyrus	brain
44	chr4:103624800-103626600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:103624800-103634200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:103625000-103629000	Strong transcription	Primary B cells from cord blood	blood
47	chr4:103625400-103627200	Enhancers	Placenta Amnion	Placenta Amnion
48	chr4:103625600-103626800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr4:103626200-103626800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr4:103626200-103626800	Strong transcription	Ovary	ovary

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