Variant report

Variant	rs3974634
Chromosome Location	chr4:103633009-103633010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10000705	1.00[CEU][hapmap]
rs10003141	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17033181	1.00[CEU][hapmap]
rs2167456	1.00[CEU][hapmap]
rs3974632	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4648138	1.00[CEU][hapmap]
rs6857760	1.00[TSI][hapmap]
rs9991351	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008110	chr4:103560583-103684526	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1013963	chr4:103606672-103645082	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103547000-103658200	Weak transcription	Small Intestine	intestine
2	chr4:103553000-103651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:103553400-103651400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:103556200-103650400	Weak transcription	Pancreas	Pancrea
5	chr4:103571800-103633600	Weak transcription	HepG2	liver
6	chr4:103571800-103655800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:103572000-103640800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:103580000-103644000	Weak transcription	Aorta	Aorta
9	chr4:103580400-103640600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:103581800-103681000	Weak transcription	Spleen	Spleen
11	chr4:103586000-103640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:103596200-103640600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:103608800-103644600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:103609200-103644000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:103609600-103633600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:103609600-103640200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:103609600-103664800	Weak transcription	Esophagus	oesophagus
18	chr4:103610000-103640600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:103611200-103634400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:103611800-103635200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:103611800-103638800	Weak transcription	Liver	Liver
22	chr4:103612000-103633800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:103612000-103633800	Weak transcription	Adipose Nuclei	Adipose
24	chr4:103612000-103644000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr4:103614800-103634000	Weak transcription	Fetal Intestine Large	intestine
26	chr4:103617000-103640200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr4:103617800-103633600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:103618000-103634000	Weak transcription	Fetal Lung	lung
29	chr4:103618400-103655800	Weak transcription	HSMM	muscle
30	chr4:103622600-103643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr4:103623800-103633200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:103624800-103634200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:103626600-103635000	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:103626800-103638600	Weak transcription	Ovary	ovary
35	chr4:103627000-103644200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:103627000-103650000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr4:103627200-103633800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:103627200-103636000	Weak transcription	Left Ventricle	heart
39	chr4:103627200-103638600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:103627400-103635000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:103627400-103639200	Weak transcription	Fetal Intestine Small	intestine
42	chr4:103627400-103649800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr4:103627400-103650200	Weak transcription	Fetal Stomach	stomach
44	chr4:103627400-103650200	Weak transcription	Gastric	stomach
45	chr4:103627400-103650200	Weak transcription	Thymus	Thymus
46	chr4:103627400-103651000	Weak transcription	Right Ventricle	heart
47	chr4:103627400-103655400	Weak transcription	Lung	lung
48	chr4:103627600-103648600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr4:103627600-103652400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:103627800-103634000	Weak transcription	Primary B cells from peripheral blood	blood

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