Variant report

Variant	rs10003215
Chromosome Location	chr4:151181269-151181270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10004618	0.84[AMR][1000 genomes]
rs10007367	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10007538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10010611	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10018151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10222778	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10471054	0.83[AMR][1000 genomes]
rs1080194	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12331959	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13136928	0.83[AMR][1000 genomes]
rs1546417	0.83[AMR][1000 genomes]
rs17631959	1.00[YRI][hapmap]
rs17632215	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17688556	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17688594	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2055688	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2359928	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2359940	1.00[YRI][hapmap]
rs28885675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4696085	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4696647	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56145629	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57529227	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59545554	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6535732	0.82[CEU][hapmap];0.90[MEX][hapmap];0.80[AMR][1000 genomes]
rs6535733	0.83[AMR][1000 genomes]
rs7657948	0.80[AMR][1000 genomes]
rs7659675	0.80[AMR][1000 genomes]
rs7672419	0.90[AMR][1000 genomes]
rs7687678	0.80[AMR][1000 genomes]
rs7691809	0.80[AMR][1000 genomes]
rs7692491	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1022132	chr4:151162048-151183859	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv880257	chr4:151170387-151231371	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv880258	chr4:151171082-151190804	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151160000-151185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:151166400-151199000	Weak transcription	Gastric	stomach
3	chr4:151170000-151187000	Weak transcription	NH-A	brain
4	chr4:151170000-151199000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:151171200-151186800	Weak transcription	Pancreas	Pancrea
6	chr4:151172000-151185400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:151172800-151185400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:151172800-151188200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:151172800-151201600	Weak transcription	GM12878-XiMat	blood
10	chr4:151173000-151182200	Strong transcription	Fetal Brain Female	brain
11	chr4:151173000-151184600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:151173200-151192000	Weak transcription	Fetal Brain Male	brain
13	chr4:151173400-151183800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:151173400-151184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:151173400-151201400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:151173800-151186800	Weak transcription	Aorta	Aorta
17	chr4:151175000-151185400	Weak transcription	NHLF	lung
18	chr4:151175400-151188000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:151175800-151186800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:151175800-151186800	Weak transcription	Ovary	ovary
21	chr4:151176000-151182800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:151176400-151202800	Weak transcription	Psoas Muscle	Psoas
23	chr4:151176600-151185400	Weak transcription	Adipose Nuclei	Adipose
24	chr4:151177000-151185200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr4:151178000-151186800	Weak transcription	Thymus	Thymus
26	chr4:151178000-151193200	Weak transcription	Fetal Lung	lung
27	chr4:151178200-151185200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr4:151178200-151185800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:151178200-151190800	Weak transcription	Small Intestine	intestine
30	chr4:151178200-151192800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:151178200-151193000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:151178200-151204200	Weak transcription	Colonic Mucosa	Colon
33	chr4:151178400-151186200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:151178400-151187000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr4:151178400-151187000	Weak transcription	A549	lung
36	chr4:151178400-151187400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:151178400-151192800	Weak transcription	Lung	lung
38	chr4:151178400-151201400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:151178400-151201600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:151178400-151208600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr4:151178600-151182400	Weak transcription	Primary T cells from cord blood	blood
42	chr4:151178800-151186800	Weak transcription	Liver	Liver
43	chr4:151178800-151191800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:151179400-151186600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:151179600-151186000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:151179600-151186600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:151179600-151186800	Weak transcription	Stomach Mucosa	stomach
48	chr4:151179800-151182800	Weak transcription	HSMM	muscle
49	chr4:151180000-151182400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:151180000-151186600	Weak transcription	Rectal Mucosa Donor 29	rectum

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