Variant report

Variant	rs10003233
Chromosome Location	chr4:142679432-142679433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10018460	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10033884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519610	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10833	0.96[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12498901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12504148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12510514	1.00[JPT][hapmap]
rs13142633	0.84[EUR][1000 genomes]
rs1389099	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1493015	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1607595	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17007561	0.96[ASN][1000 genomes]
rs17364630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2131413	0.96[ASN][1000 genomes]
rs2131414	0.96[ASN][1000 genomes]
rs2131415	0.96[ASN][1000 genomes]
rs3113914	0.96[ASN][1000 genomes]
rs4956405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs55706905	0.96[ASN][1000 genomes]
rs56082300	0.96[ASN][1000 genomes]
rs56129444	0.96[ASN][1000 genomes]
rs56305248	0.85[ASN][1000 genomes]
rs56332929	0.96[ASN][1000 genomes]
rs56761520	0.91[ASN][1000 genomes]
rs6827248	0.96[ASN][1000 genomes]
rs6842735	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6850492	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs72712404	0.96[ASN][1000 genomes]
rs72712412	0.96[ASN][1000 genomes]
rs72712413	0.96[ASN][1000 genomes]
rs72712415	0.96[ASN][1000 genomes]
rs72712416	0.96[ASN][1000 genomes]
rs72712417	0.96[ASN][1000 genomes]
rs72712418	0.96[ASN][1000 genomes]
rs72712421	0.96[ASN][1000 genomes]
rs72712423	0.96[ASN][1000 genomes]
rs72712425	0.96[ASN][1000 genomes]
rs72712427	0.96[ASN][1000 genomes]
rs72712428	0.96[ASN][1000 genomes]
rs72712434	0.96[ASN][1000 genomes]
rs72712436	0.96[ASN][1000 genomes]
rs72712438	0.96[ASN][1000 genomes]
rs72712443	0.96[ASN][1000 genomes]
rs72712444	0.96[ASN][1000 genomes]
rs72712445	0.96[ASN][1000 genomes]
rs72712448	0.96[ASN][1000 genomes]
rs72712452	0.96[ASN][1000 genomes]
rs7349640	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7440292	0.98[ASN][1000 genomes]
rs7668411	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7688025	0.96[ASN][1000 genomes]
rs7688999	0.96[ASN][1000 genomes]
rs7694632	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3448093	chr4:142612197-142704695	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142679000-142680000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:142679200-142681000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:142679400-142680800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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