Variant report

Variant	rs10003689
Chromosome Location	chr4:91501578-91501579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10008583	1.00[CEU][hapmap]
rs10014009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10030479	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11932492	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap]
rs11943803	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17017169	1.00[CHB][hapmap]
rs17017212	1.00[EUR][1000 genomes]
rs17017213	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17017217	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17017254	1.00[CHB][hapmap]
rs1828421	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28477264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566030	1.00[EUR][1000 genomes]
rs28628469	1.00[EUR][1000 genomes]
rs28863528	1.00[EUR][1000 genomes]
rs58670135	1.00[EUR][1000 genomes]
rs6816437	1.00[EUR][1000 genomes]
rs6821905	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6845935	1.00[CHB][hapmap]
rs7665074	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7665610	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9996173	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1830936	chr4:91287204-91546380	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv879543	chr4:91428124-91524285	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3406510	chr4:91500970-91508516	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3394548	chr4:91500980-91508514	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv516733	chr4:91501578-91501614	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91494400-91501600	Weak transcription	Left Ventricle	heart
2	chr4:91500600-91501600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:91500600-91501800	Enhancers	Fetal Kidney	kidney
4	chr4:91501200-91501800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:91501200-91502200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:91501400-91501800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:91501400-91501800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:91501400-91501800	Enhancers	Fetal Lung	lung
9	chr4:91501400-91502000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr4:91501400-91502000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:91501400-91502000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:91501400-91502400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:91501400-91503800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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