Variant report
| Variant | rs11943803 |
|---|---|
| Chromosome Location | chr4:91521184-91521185 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:91520650..91523226-chr4:91526480..91528808,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10003689 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10014009 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10025951 | 1.00[MEX][hapmap] |
| rs10026112 | 1.00[MEX][hapmap] |
| rs10031148 | 1.00[MEX][hapmap] |
| rs17017084 | 1.00[CHD][hapmap] |
| rs17017169 | 1.00[CHB][hapmap] |
| rs17017214 | 1.00[MEX][hapmap] |
| rs17017254 | 1.00[CHB][hapmap] |
| rs17017282 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6838438 | 1.00[MEX][hapmap] |
| rs6845935 | 1.00[CHB][hapmap] |
| rs7665074 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7665610 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv1830936 | chr4:91287204-91546380 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv879543 | chr4:91428124-91524285 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
