Variant report
| Variant | rs17017282 |
|---|---|
| Chromosome Location | chr4:91535070-91535071 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10025951 | 1.00[MEX][hapmap] |
| rs10026112 | 1.00[MEX][hapmap] |
| rs10031148 | 1.00[MEX][hapmap] |
| rs11943803 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs17017214 | 1.00[MEX][hapmap] |
| rs17017283 | 0.92[YRI][hapmap] |
| rs6838438 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv1830936 | chr4:91287204-91546380 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
