Variant report

Variant rs1000405
Chromosome Location chr12:46656522-46656523
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:46597600-46659600 Weak transcription Colonic Mucosa Colon
2 chr12:46635600-46660000 Weak transcription Fetal Muscle Trunk muscle
3 chr12:46640400-46660600 Weak transcription Aorta Aorta
4 chr12:46645200-46659600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr12:46648400-46658400 Weak transcription HUVEC blood vessel
6 chr12:46648600-46657400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
7 chr12:46648800-46656600 Weak transcription Fetal Brain Female brain
8 chr12:46649200-46657800 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr12:46649400-46659600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr12:46650400-46659400 Genic enhancers Primary B cells from peripheral blood blood
11 chr12:46650800-46657800 Enhancers Placenta Amnion Placenta Amnion
12 chr12:46651600-46659600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr12:46651800-46656800 Weak transcription Thymus Thymus
14 chr12:46652000-46658000 Weak transcription Primary hematopoietic stem cells blood
15 chr12:46652000-46659600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr12:46652200-46659400 Enhancers HepG2 liver
17 chr12:46653000-46657000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr12:46653400-46657800 Genic enhancers NHEK skin
19 chr12:46653400-46659600 Enhancers Rectal Smooth Muscle rectum
20 chr12:46653600-46657200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
21 chr12:46653600-46658200 Enhancers Colon Smooth Muscle Colon
22 chr12:46653600-46658600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr12:46653600-46659200 Enhancers iPS-15b Cell Line embryonic stem cell
24 chr12:46654000-46659600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr12:46654200-46658000 Enhancers ES-WA7 Cell Line embryonic stem cell
26 chr12:46654600-46656800 Enhancers Fetal Heart heart
27 chr12:46654600-46657200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr12:46654600-46657400 Weak transcription Small Intestine intestine
29 chr12:46654600-46658600 Genic enhancers K562 blood
30 chr12:46654600-46659000 Genic enhancers Primary B cells from cord blood blood
31 chr12:46654600-46661000 Weak transcription Spleen Spleen
32 chr12:46654800-46656800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr12:46654800-46657200 Weak transcription Placenta Placenta
34 chr12:46654800-46657400 Enhancers Breast Myoepithelial Primary Cells Breast
35 chr12:46654800-46658800 Enhancers Skeletal Muscle Male skeletal muscle
36 chr12:46654800-46659600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr12:46654800-46659600 Weak transcription Brain Angular Gyrus brain
38 chr12:46655000-46659600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr12:46655200-46657400 Enhancers ES-I3 Cell Line embryonic stem cell
40 chr12:46655200-46658000 Genic enhancers Primary T regulatory cells fromperipheralblood blood
41 chr12:46655400-46657400 Enhancers Stomach Smooth Muscle stomach
42 chr12:46655400-46657600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr12:46655600-46657400 Weak transcription HSMM muscle
44 chr12:46655600-46659600 Weak transcription Fetal Intestine Large intestine
45 chr12:46655800-46656600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr12:46655800-46656800 Enhancers Primary T cells from cord blood blood
47 chr12:46655800-46656800 Enhancers Primary T helper naive cells fromperipheralblood blood
48 chr12:46655800-46656800 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
49 chr12:46655800-46656800 Weak transcription Fetal Intestine Small intestine
50 chr12:46655800-46657000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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