Variant report

Variant	rs10004368
Chromosome Location	chr4:62496325-62496326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10001410	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10007614	0.88[ASN][1000 genomes]
rs10020698	0.80[AMR][1000 genomes]
rs11131337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11131340	0.86[JPT][hapmap];0.83[MEX][hapmap]
rs11131341	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.91[ASN][1000 genomes]
rs11931258	0.86[JPT][hapmap]
rs12233820	0.92[ASN][1000 genomes]
rs12233859	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12507326	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12510774	0.87[MEX][hapmap]
rs12642037	0.86[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12642315	0.83[JPT][hapmap]
rs13115278	0.92[ASN][1000 genomes]
rs1391320	0.92[ASN][1000 genomes]
rs1497897	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1497899	0.92[ASN][1000 genomes]
rs1497900	0.89[ASN][1000 genomes]
rs1497919	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1542834	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1587294	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1846161	0.81[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes]
rs1948616	1.00[CEU][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap]
rs2036199	0.86[JPT][hapmap];0.87[MEX][hapmap]
rs2088461	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2088462	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2343526	0.81[AMR][1000 genomes]
rs35550109	0.86[JPT][hapmap];0.91[MEX][hapmap]
rs4484334	1.00[CEU][hapmap]
rs4552500	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4860097	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4860422	1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs4860423	0.92[ASN][1000 genomes]
rs4860424	0.92[ASN][1000 genomes]
rs57415754	0.92[ASN][1000 genomes]
rs6551636	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs6820960	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6855108	0.91[CHB][hapmap]
rs7660566	0.86[EUR][1000 genomes]
rs7675385	0.84[JPT][hapmap]
rs996208	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62496200-62496600	Enhancers	Fetal Brain Male	brain

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