Variant report

Variant	rs6551636
Chromosome Location	chr4:62500995-62500996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10001410	0.83[CEU][hapmap]
rs10004368	0.82[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10020698	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11131337	0.83[CEU][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11131340	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11131341	0.82[JPT][hapmap]
rs11931258	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11936993	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12233859	0.87[JPT][hapmap]
rs12507326	0.87[JPT][hapmap]
rs12510774	0.91[CHB][hapmap]
rs12642037	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13115278	0.81[AMR][1000 genomes]
rs13142656	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1497897	0.87[JPT][hapmap]
rs1497919	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542834	0.87[JPT][hapmap];0.81[AMR][1000 genomes]
rs1587294	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1846161	0.86[JPT][hapmap]
rs1948616	0.82[CEU][hapmap]
rs2036199	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2088461	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2088462	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2343526	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35550109	0.86[JPT][hapmap]
rs4484334	0.83[CEU][hapmap]
rs4552500	0.82[JPT][hapmap]
rs4860097	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4860422	0.87[JPT][hapmap];0.83[AMR][1000 genomes]
rs4860423	0.81[AMR][1000 genomes]
rs4860424	0.81[AMR][1000 genomes]
rs6820960	0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs7675385	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7690118	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7690472	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1004815	chr4:62398737-62553769	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537110	chr4:62398737-62553769	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879077	chr4:62419426-62545435	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv594331	chr4:62498946-62502358	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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