Variant report

Variant	rs10004779
Chromosome Location	chr4:96347978-96347979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12509432	1.00[CEU][hapmap]
rs2128914	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv879626	chr4:96347978-96388651	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96333600-96348800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:96334600-96353000	Weak transcription	Fetal Kidney	kidney
3	chr4:96341600-96349600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:96342200-96349600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96347200-96348400	Enhancers	Brain Cingulate Gyrus	brain
6	chr4:96347400-96348200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr4:96347400-96348200	Enhancers	Fetal Lung	lung
8	chr4:96347400-96348600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:96347600-96348200	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr4:96347600-96348400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:96347600-96348400	Enhancers	Brain Substantia Nigra	brain
12	chr4:96347800-96348000	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr4:96347800-96348000	Active TSS	Fetal Brain Male	brain
14	chr4:96347800-96348400	Active TSS	Brain Angular Gyrus	brain
15	chr4:96347800-96348400	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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