Variant report

Variant	rs12509432
Chromosome Location	chr4:96353779-96353780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10004779	1.00[CEU][hapmap]
rs2128914	1.00[CEU][hapmap]
rs41424348	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv879626	chr4:96347978-96388651	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96349400-96354000	Enhancers	Brain Cingulate Gyrus	brain
2	chr4:96350800-96384400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:96351200-96361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:96351400-96359600	Weak transcription	Fetal Lung	lung
5	chr4:96352800-96354200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:96352800-96354600	Enhancers	Brain Hippocampus Middle	brain
7	chr4:96353000-96354000	Enhancers	Fetal Kidney	kidney
8	chr4:96353200-96353800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:96353200-96356800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr4:96353400-96354000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:96353600-96353800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:96353600-96353800	Enhancers	Aorta	Aorta
13	chr4:96353600-96354000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:96353600-96354000	Enhancers	Brain Angular Gyrus	brain
15	chr4:96353600-96354200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:96353600-96354200	Enhancers	Brain Anterior Caudate	brain
17	chr4:96353600-96354200	Enhancers	Brain Substantia Nigra	brain
18	chr4:96353600-96354400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:96353600-96354400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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