Variant report

Variant	rs10006403
Chromosome Location	chr4:26873700-26873701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26862208..26864121-chr4:26871269..26873749,2	K562	blood:
2	chr4:26864497..26869713-chr4:26871452..26874672,4	K562	blood:
3	chr4:26870794..26874241-chr4:26874669..26877356,3	K562	blood:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction
ENSG00000248340	Chromatin interaction
ENSG00000240005	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10023256	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10470822	0.85[CEU][hapmap]
rs12331333	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12642608	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs13434709	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17555311	0.85[CEU][hapmap]
rs4519791	0.85[CEU][hapmap]
rs4692132	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6448485	0.81[CEU][hapmap]
rs6448487	0.80[CEU][hapmap]
rs6831605	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs6847438	0.81[CEU][hapmap]
rs724624	0.80[CEU][hapmap]
rs7658174	0.81[CEU][hapmap]
rs7672936	0.85[CEU][hapmap]
rs7678705	0.93[ASN][1000 genomes]
rs7692953	0.85[CEU][hapmap]
rs9654109	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9654110	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9998368	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26863800-26874600	Weak transcription	Left Ventricle	heart
2	chr4:26863800-26874600	Weak transcription	Spleen	Spleen
3	chr4:26863800-26875400	Weak transcription	Lung	lung
4	chr4:26864200-26876800	Weak transcription	Colonic Mucosa	Colon
5	chr4:26864200-26877200	Weak transcription	Aorta	Aorta
6	chr4:26864400-26886600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:26864600-26885600	Weak transcription	Thymus	Thymus
8	chr4:26865600-26876000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:26866000-26880400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:26866000-26881800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:26867200-26879000	Weak transcription	Fetal Intestine Small	intestine
12	chr4:26867200-26880000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:26867200-26884200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:26869400-26876200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:26869600-26874600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:26869600-26876000	Enhancers	Primary T cells from cord blood	blood
17	chr4:26869800-26874600	Weak transcription	Brain Angular Gyrus	brain
18	chr4:26869800-26875400	Weak transcription	Pancreas	Pancrea
19	chr4:26869800-26877000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr4:26869800-26886000	Weak transcription	Fetal Stomach	stomach
21	chr4:26870000-26874400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr4:26870000-26874600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:26870000-26875000	Weak transcription	Brain Anterior Caudate	brain
24	chr4:26870000-26875000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:26870000-26875000	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:26870000-26875000	Weak transcription	Fetal Thymus	thymus
27	chr4:26870000-26875200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:26870000-26875200	Weak transcription	Adipose Nuclei	Adipose
29	chr4:26870000-26876400	Weak transcription	Brain Substantia Nigra	brain
30	chr4:26870000-26879400	Weak transcription	NHLF	lung
31	chr4:26870000-26879600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:26870200-26874800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr4:26870400-26875800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:26870600-26874400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:26870600-26881800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:26870800-26874800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:26870800-26875000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:26870800-26879200	Weak transcription	Small Intestine	intestine
39	chr4:26870800-26880800	Weak transcription	Stomach Mucosa	stomach
40	chr4:26871000-26874400	Weak transcription	GM12878-XiMat	blood
41	chr4:26871000-26875400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:26871000-26875400	Weak transcription	Psoas Muscle	Psoas
43	chr4:26871200-26875000	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr4:26871400-26876800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr4:26871600-26876800	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr4:26872000-26874400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr4:26872200-26876000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:26872400-26873800	Enhancers	Fetal Heart	heart
49	chr4:26872400-26874000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:26872600-26873800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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