Variant report

Variant	rs13434709
Chromosome Location	chr4:26914539-26914540
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26903933..26906548-chr4:26914437..26916470,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10006403	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023256	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10939144	0.81[CEU][hapmap]
rs12331333	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12642608	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs17555311	0.82[CEU][hapmap]
rs4692132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692137	0.81[CEU][hapmap]
rs6448478	0.80[JPT][hapmap]
rs6448485	0.86[CEU][hapmap]
rs6448487	0.85[CEU][hapmap]
rs6831605	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs6847438	0.86[CEU][hapmap]
rs7658174	0.85[CEU][hapmap]
rs7678705	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7692953	0.83[CEU][hapmap]
rs9654109	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9654110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998368	0.85[CEU][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26880600-26921600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:26886600-26921600	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:26907000-26917400	Weak transcription	Gastric	stomach
4	chr4:26907200-26937800	Weak transcription	Stomach Mucosa	stomach
5	chr4:26908400-26914800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr4:26909000-26915800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:26909600-26916600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:26909600-26921400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:26909600-26923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:26909800-26921400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:26910000-26915800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:26910000-26916200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:26910000-26926600	Weak transcription	Fetal Stomach	stomach
14	chr4:26910200-26921000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:26910200-26921000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:26910200-26921200	Weak transcription	Primary B cells from cord blood	blood
17	chr4:26910200-26925800	Weak transcription	NHEK	skin
18	chr4:26910400-26914600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr4:26910400-26921400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:26910800-26921800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:26911000-26915000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr4:26911000-26915400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:26911000-26917400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:26911600-26965800	Weak transcription	HMEC	breast
25	chr4:26911800-26915000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr4:26912000-26915800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr4:26912200-26914600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:26912400-26914600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:26912400-26914800	Enhancers	Primary B cells from peripheral blood	blood
30	chr4:26912400-26918800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:26912600-26921600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:26912800-26919600	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr4:26913000-26914600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr4:26913000-26914800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:26913000-26915000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr4:26913000-26920200	Enhancers	Primary T cells from cord blood	blood
37	chr4:26913200-26914600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:26913200-26914600	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr4:26913200-26914800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr4:26913200-26914800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr4:26913200-26914800	Enhancers	GM12878-XiMat	blood
42	chr4:26913200-26915000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr4:26913400-26914600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr4:26913400-26914800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr4:26913400-26914800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:26913400-26914800	Enhancers	Brain Hippocampus Middle	brain
47	chr4:26913800-26914600	Enhancers	Small Intestine	intestine
48	chr4:26913800-26914600	Enhancers	Thymus	Thymus
49	chr4:26913800-26914800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:26913800-26914800	Enhancers	Left Ventricle	heart

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