Variant report

Variant	rs10007252
Chromosome Location	chr4:26682497-26682498
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26682077..26683738-chr4:26702158..26703835,2	K562	blood:
2	chr4:26674755..26676897-chr4:26682042..26683729,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10030685	0.80[AFR][1000 genomes]
rs10939126	0.83[AMR][1000 genomes]
rs1362505	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28583070	0.80[AFR][1000 genomes]
rs28670078	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28788902	0.81[AFR][1000 genomes]
rs28838894	1.00[AMR][1000 genomes]
rs28840721	0.80[AFR][1000 genomes]
rs28862718	0.83[AMR][1000 genomes]
rs28896552	0.81[AFR][1000 genomes]
rs9992395	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26659600-26687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:26660600-26689000	Weak transcription	HMEC	breast
5	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
6	chr4:26663600-26684000	Weak transcription	Fetal Kidney	kidney
7	chr4:26663600-26691800	Weak transcription	Right Ventricle	heart
8	chr4:26663800-26691200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:26663800-26691400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:26666800-26685800	Weak transcription	Left Ventricle	heart
12	chr4:26666800-26691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
14	chr4:26676000-26687000	Weak transcription	NHDF-Ad	bronchial
15	chr4:26676800-26685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:26678600-26691400	Weak transcription	Adipose Nuclei	Adipose
17	chr4:26679000-26682600	Strong transcription	Osteobl	bone
18	chr4:26680000-26682600	ZNF genes & repeats	Dnd41	blood
19	chr4:26680000-26688400	Weak transcription	NHLF	lung
20	chr4:26680400-26691000	Weak transcription	Primary T cells from cord blood	blood
21	chr4:26681000-26682600	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr4:26681000-26683200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:26681400-26688200	Weak transcription	NH-A	brain
24	chr4:26681400-26691400	Weak transcription	Ovary	ovary
25	chr4:26681400-26691800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:26681400-26693000	Weak transcription	Fetal Stomach	stomach
27	chr4:26681400-26694800	Weak transcription	Fetal Intestine Large	intestine
28	chr4:26681400-26695200	Weak transcription	Lung	lung
29	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
31	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:26681600-26684000	Weak transcription	Fetal Lung	lung
33	chr4:26681600-26685400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:26681600-26685800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:26681600-26685800	Weak transcription	Gastric	stomach
36	chr4:26681600-26685800	Weak transcription	HSMM	muscle
37	chr4:26681600-26687800	Weak transcription	Fetal Brain Male	brain
38	chr4:26681600-26691200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:26681600-26691400	Weak transcription	Brain Hippocampus Middle	brain
40	chr4:26681600-26692200	Weak transcription	Liver	Liver
41	chr4:26681600-26693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:26681800-26682800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:26681800-26684800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:26681800-26685800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:26681800-26685800	Weak transcription	Thymus	Thymus
47	chr4:26681800-26686000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:26681800-26686000	Weak transcription	Fetal Muscle Leg	muscle
49	chr4:26681800-26686800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:26681800-26686800	Weak transcription	HSMMtube	muscle

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