Variant report

Variant	rs10008046
Chromosome Location	chr4:26319850-26319851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10009355	0.87[EUR][1000 genomes]
rs12651502	0.85[CEU][hapmap]
rs2077777	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs3822223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56762644	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6448449	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6826838	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6837108	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6844691	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6847065	0.85[CEU][hapmap]
rs7657866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7680738	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26309600-26320600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:26316600-26320400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:26319200-26320200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:26319400-26320000	ZNF genes & repeats	GM12878-XiMat	blood
6	chr4:26319400-26320200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:26319800-26320000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:26319800-26320000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:26319800-26320000	Enhancers	Hela-S3	cervix
10	chr4:26319800-26320000	Enhancers	K562	blood
11	chr4:26319800-26320000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr4:26319800-26320200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:26319800-26320200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:26319800-26320200	Enhancers	HepG2	liver
15	chr4:26319800-26320400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr4:26319800-26324800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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