Variant report

Variant	rs6847065
Chromosome Location	chr4:26407729-26407730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10008046	0.85[CEU][hapmap]
rs10009355	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10517097	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10517098	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10517099	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10517100	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12651502	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16878322	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16878337	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2077777	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes]
rs3109852	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3113020	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3113021	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3113022	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3113025	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34295457	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3822223	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs4586917	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4642237	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56852953	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57176801	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57992401	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58429332	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59261117	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59648207	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60115690	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60623530	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60730169	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60849820	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6814208	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6833606	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6847065	SNORD75	trans	lymphoblastoid	seeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
6	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
8	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
9	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
10	chr4:26385600-26408000	Weak transcription	K562	blood
11	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:26387000-26407800	Weak transcription	A549	lung
13	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:26390200-26407800	Weak transcription	Liver	Liver
15	chr4:26390400-26407800	Weak transcription	HepG2	liver
16	chr4:26390400-26407800	Weak transcription	HUVEC	blood vessel
17	chr4:26390400-26408000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:26390800-26407800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:26390800-26407800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:26390800-26407800	Weak transcription	HMEC	breast
21	chr4:26390800-26408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:26390800-26408000	Weak transcription	Thymus	Thymus
23	chr4:26391000-26408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:26391200-26408000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:26391200-26408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:26391400-26407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:26391400-26408000	Weak transcription	Colonic Mucosa	Colon
28	chr4:26391800-26407800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:26394000-26408000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:26394400-26407800	Weak transcription	Placenta	Placenta
31	chr4:26394400-26407800	Weak transcription	NHEK	skin
32	chr4:26395400-26408000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:26396800-26407800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:26397000-26408000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:26397000-26408000	Weak transcription	NHLF	lung
36	chr4:26397400-26407800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr4:26397400-26407800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:26397400-26407800	Weak transcription	Osteobl	bone
39	chr4:26397400-26408000	Weak transcription	Fetal Intestine Large	intestine
40	chr4:26398600-26407800	Weak transcription	Adipose Nuclei	Adipose
41	chr4:26398800-26407800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:26398800-26407800	Weak transcription	Fetal Lung	lung
43	chr4:26399000-26407800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:26399000-26407800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:26399000-26407800	Weak transcription	Fetal Thymus	thymus
46	chr4:26399000-26408000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr4:26399000-26408000	Weak transcription	Ovary	ovary
48	chr4:26399800-26437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr4:26400200-26407800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:26400400-26408000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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