Variant report

Variant	rs3113021
Chromosome Location	chr4:26438732-26438733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10517097	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517098	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517099	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517100	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878322	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16878337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3109852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34295457	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4586917	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56852953	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57176801	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57992401	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59261117	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59648207	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60115690	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60623530	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60730169	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60849820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814208	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847065	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv11028	chr4:26438714-26441364	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
3	chr4:26408000-26439000	Weak transcription	Hela-S3	cervix
4	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
5	chr4:26413800-26440200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr4:26414600-26443000	Weak transcription	Fetal Brain Male	brain
7	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:26420200-26440600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr4:26422200-26440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:26422200-26440800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:26422800-26441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:26423000-26442600	Weak transcription	Fetal Heart	heart
13	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
15	chr4:26424400-26440800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:26425200-26441800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:26425600-26442600	Weak transcription	Stomach Mucosa	stomach
18	chr4:26425800-26440200	Strong transcription	Placenta	Placenta
19	chr4:26426200-26440600	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:26427200-26440000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:26428600-26440600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:26428800-26442600	Weak transcription	Pancreas	Pancrea
23	chr4:26429000-26442800	Weak transcription	Psoas Muscle	Psoas
24	chr4:26431000-26440200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:26431800-26444400	Weak transcription	Gastric	stomach
26	chr4:26431800-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:26432000-26440000	Weak transcription	K562	blood
28	chr4:26432400-26441600	Weak transcription	HUVEC	blood vessel
29	chr4:26432400-26443400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:26432600-26439000	Weak transcription	Lung	lung
31	chr4:26432600-26439400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:26432600-26439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:26432600-26442600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:26432600-26442600	Weak transcription	Brain Anterior Caudate	brain
35	chr4:26432600-26442800	Weak transcription	Esophagus	oesophagus
36	chr4:26432600-26442800	Weak transcription	Right Ventricle	heart
37	chr4:26432600-26444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr4:26432600-26445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:26432800-26439400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:26432800-26439800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:26432800-26442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:26433200-26440800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:26433600-26439800	Weak transcription	Brain Germinal Matrix	brain
44	chr4:26433600-26444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:26433800-26439600	Weak transcription	Fetal Kidney	kidney
46	chr4:26433800-26441800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr4:26433800-26444200	Weak transcription	HepG2	liver
48	chr4:26434000-26439000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:26434400-26440000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr4:26434400-26442600	Weak transcription	Brain Inferior Temporal Lobe	brain

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