Variant report

Variant	rs10517097
Chromosome Location	chr4:26430147-26430148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10009355	0.81[EUR][1000 genomes]
rs10517098	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517099	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517100	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651502	0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs16878322	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16878337	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077777	0.85[CHB][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs3109852	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113020	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113021	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113022	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113025	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34295457	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3822223	0.84[TSI][hapmap]
rs4586917	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642237	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56852953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57176801	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57992401	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59261117	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59648207	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60115690	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60623530	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60730169	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60849820	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814208	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833606	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847065	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
3	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:26399800-26437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:26404400-26436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:26408000-26439000	Weak transcription	Hela-S3	cervix
7	chr4:26408400-26431000	Weak transcription	Fetal Kidney	kidney
8	chr4:26408400-26431400	Weak transcription	Esophagus	oesophagus
9	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
10	chr4:26408600-26430800	Weak transcription	HUVEC	blood vessel
11	chr4:26408600-26430800	Weak transcription	K562	blood
12	chr4:26408800-26432200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:26409000-26431000	Weak transcription	NHEK	skin
14	chr4:26409000-26431600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:26409000-26431600	Weak transcription	HMEC	breast
16	chr4:26413800-26440200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr4:26414200-26432200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:26414600-26443000	Weak transcription	Fetal Brain Male	brain
19	chr4:26414800-26431000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:26415000-26431000	Weak transcription	Gastric	stomach
21	chr4:26415000-26431400	Weak transcription	Lung	lung
22	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr4:26418200-26431600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr4:26419400-26431800	Weak transcription	Small Intestine	intestine
25	chr4:26420200-26440600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr4:26421000-26432200	Weak transcription	Fetal Intestine Small	intestine
27	chr4:26421600-26434400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:26422000-26436200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr4:26422200-26433600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr4:26422200-26434800	Strong transcription	Primary B cells from cord blood	blood
31	chr4:26422200-26436600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:26422200-26437200	Strong transcription	Adipose Nuclei	Adipose
33	chr4:26422200-26440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:26422200-26440800	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr4:26422800-26430800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr4:26422800-26433600	Strong transcription	HSMM	muscle
37	chr4:26422800-26441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr4:26423000-26442600	Weak transcription	Fetal Heart	heart
39	chr4:26423200-26433000	Strong transcription	NHDF-Ad	bronchial
40	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
42	chr4:26424400-26430600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr4:26424400-26440800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:26425000-26438400	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr4:26425200-26430800	Weak transcription	Right Ventricle	heart
46	chr4:26425200-26433200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr4:26425200-26441800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:26425600-26442600	Weak transcription	Stomach Mucosa	stomach
49	chr4:26425800-26430200	Strong transcription	Fetal Thymus	thymus
50	chr4:26425800-26433600	Strong transcription	iPS-15b Cell Line	embryonic stem cell

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