Variant report

Variant	rs6833606
Chromosome Location	chr4:26440988-26440989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26438899..26441461-chr4:26443781..26447435,3	K562	blood:
2	chr4:26439953..26442346-chr4:27061840..27063686,2	K562	blood:
3	chr4:26439053..26441508-chr4:26443087..26445412,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10517097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878322	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16878337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077777	0.85[CHB][hapmap]
rs3109852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113020	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113021	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34295457	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4586917	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56852953	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57176801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57992401	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59261117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59648207	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60115690	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60623530	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60730169	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60849820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814208	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847065	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv11028	chr4:26438714-26441364	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
2	chr4:26414600-26443000	Weak transcription	Fetal Brain Male	brain
3	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:26422800-26441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:26423000-26442600	Weak transcription	Fetal Heart	heart
6	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
8	chr4:26425200-26441800	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:26425600-26442600	Weak transcription	Stomach Mucosa	stomach
10	chr4:26428800-26442600	Weak transcription	Pancreas	Pancrea
11	chr4:26429000-26442800	Weak transcription	Psoas Muscle	Psoas
12	chr4:26431800-26444400	Weak transcription	Gastric	stomach
13	chr4:26431800-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:26432400-26441600	Weak transcription	HUVEC	blood vessel
15	chr4:26432400-26443400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:26432600-26442600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:26432600-26442600	Weak transcription	Brain Anterior Caudate	brain
18	chr4:26432600-26442800	Weak transcription	Esophagus	oesophagus
19	chr4:26432600-26442800	Weak transcription	Right Ventricle	heart
20	chr4:26432600-26444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:26432600-26445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:26432800-26442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:26433600-26444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:26433800-26441800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr4:26433800-26444200	Weak transcription	HepG2	liver
26	chr4:26434400-26442600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:26434400-26443200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:26434600-26442800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:26434800-26442600	Weak transcription	Left Ventricle	heart
30	chr4:26434800-26442800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:26435000-26442800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:26435600-26441600	Weak transcription	Liver	Liver
33	chr4:26436200-26442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:26436200-26446000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:26436400-26442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:26436400-26442600	Weak transcription	Brain Angular Gyrus	brain
37	chr4:26436400-26442600	Weak transcription	Brain Substantia Nigra	brain
38	chr4:26436400-26445800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr4:26436400-26456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:26436600-26442000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr4:26436800-26441600	Strong transcription	Fetal Muscle Leg	muscle
42	chr4:26437200-26441400	Strong transcription	HSMM	muscle
43	chr4:26437600-26441400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr4:26437600-26441600	Strong transcription	NHDF-Ad	bronchial
45	chr4:26437800-26441200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:26437800-26441200	Strong transcription	Fetal Brain Female	brain
47	chr4:26437800-26441800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr4:26438000-26442400	Weak transcription	Ovary	ovary
49	chr4:26438200-26441400	Strong transcription	Fetal Stomach	stomach
50	chr4:26438400-26442200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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