Variant report

Variant	rs10008793
Chromosome Location	chr4:46889340-46889341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10021503	0.80[AMR][1000 genomes]
rs10023110	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1398171	0.80[AMR][1000 genomes]
rs1398177	0.80[AMR][1000 genomes]
rs1512129	0.82[AMR][1000 genomes]
rs1512130	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1912962	0.80[AMR][1000 genomes]
rs4560384	0.81[AMR][1000 genomes]
rs6811055	0.83[AMR][1000 genomes]
rs6843462	0.80[AMR][1000 genomes]
rs713287	0.80[AMR][1000 genomes]
rs7655866	0.83[AMR][1000 genomes]
rs7660277	0.83[AMR][1000 genomes]
rs7660336	0.80[AMR][1000 genomes]
rs7683472	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879000	chr4:46635167-46890046	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879001	chr4:46823634-46893766	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1933770	chr4:46889340-46889341	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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