Variant report

Variant	rs1398171
Chromosome Location	chr4:46903352-46903353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:46901769..46903393-chr4:46909733..46912042,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170516	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10004905	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10011168	0.87[EUR][1000 genomes]
rs10015891	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10021503	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10023110	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10023399	0.86[EUR][1000 genomes]
rs10024828	0.86[EUR][1000 genomes]
rs1116735	0.86[EUR][1000 genomes]
rs1159396	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1160092	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12696822	0.86[EUR][1000 genomes]
rs13107073	0.86[EUR][1000 genomes]
rs13130440	0.83[EUR][1000 genomes]
rs13138759	0.86[EUR][1000 genomes]
rs1398172	0.88[EUR][1000 genomes]
rs1398174	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1398177	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1512129	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1512131	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1512132	0.88[EUR][1000 genomes]
rs1512133	0.87[EUR][1000 genomes]
rs1512134	0.87[EUR][1000 genomes]
rs1512139	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859794	0.87[EUR][1000 genomes]
rs1877398	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1912962	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055941	0.87[EUR][1000 genomes]
rs2175553	0.86[EUR][1000 genomes]
rs2271429	0.87[EUR][1000 genomes]
rs2280073	0.87[EUR][1000 genomes]
rs2280074	0.87[EUR][1000 genomes]
rs28497667	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28579132	0.87[EUR][1000 genomes]
rs34130578	0.83[ASN][1000 genomes]
rs4353875	0.86[EUR][1000 genomes]
rs4560384	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4637372	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6447519	0.86[EUR][1000 genomes]
rs6811055	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843462	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6844842	0.86[EUR][1000 genomes]
rs713287	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7655866	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7660277	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7660336	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7665758	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7680308	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7683472	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7698023	0.87[EUR][1000 genomes]
rs871206	0.86[EUR][1000 genomes]
rs871207	0.86[EUR][1000 genomes]
rs9291298	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs997070	0.88[EUR][1000 genomes]
rs997071	0.88[EUR][1000 genomes]
rs9995416	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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