Variant report

Variant	rs1877398
Chromosome Location	chr4:46937725-46937726
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10004905	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10011168	0.91[EUR][1000 genomes]
rs10015891	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021503	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10023110	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023399	0.90[EUR][1000 genomes]
rs10024828	0.90[EUR][1000 genomes]
rs1116735	0.90[EUR][1000 genomes]
rs1159396	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1160092	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12696822	0.90[EUR][1000 genomes]
rs13107073	0.90[EUR][1000 genomes]
rs13130440	0.87[EUR][1000 genomes]
rs13138759	0.90[EUR][1000 genomes]
rs1398171	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398172	0.92[EUR][1000 genomes]
rs1398174	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1398177	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1512129	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1512131	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1512132	0.92[EUR][1000 genomes]
rs1512133	0.91[EUR][1000 genomes]
rs1512134	0.91[EUR][1000 genomes]
rs1512139	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16859794	0.91[EUR][1000 genomes]
rs1912962	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2055941	0.91[EUR][1000 genomes]
rs2175553	0.90[EUR][1000 genomes]
rs2271429	0.91[EUR][1000 genomes]
rs2280073	0.91[EUR][1000 genomes]
rs2280074	0.91[EUR][1000 genomes]
rs28497667	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28579132	0.91[EUR][1000 genomes]
rs34130578	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4353875	0.90[EUR][1000 genomes]
rs4560384	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4637372	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6447519	0.90[EUR][1000 genomes]
rs6811055	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6843462	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6844842	0.90[EUR][1000 genomes]
rs713287	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7655866	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7660277	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7660336	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7665758	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7680308	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7683472	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7698023	0.91[EUR][1000 genomes]
rs871206	0.90[EUR][1000 genomes]
rs871207	0.90[EUR][1000 genomes]
rs9291298	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs997070	0.92[EUR][1000 genomes]
rs997071	0.92[EUR][1000 genomes]
rs9995416	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879002	chr4:46911379-46940376	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46937000-46939600	Weak transcription	NHEK	skin
2	chr4:46937200-46938000	Weak transcription	Fetal Heart	heart
3	chr4:46937400-46937800	Weak transcription	Left Ventricle	heart

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