Variant report

Variant	rs10009574
Chromosome Location	chr4:91989547-91989548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10026935	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10446679	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10446698	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10446699	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11729972	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs1381294	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1381295	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1461592	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17017997	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17018005	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17018025	0.94[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28583822	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28857631	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28886882	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62312174	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62312175	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62312176	0.82[ASN][1000 genomes]
rs62312177	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62312179	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6532268	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532273	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6532275	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6827858	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6831564	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6837092	0.86[ASN][1000 genomes]
rs6848271	0.82[CHB][hapmap]
rs6850834	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6853003	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs9992513	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879559	chr4:91918870-92152678	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2757943	chr4:91946664-92146114	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759267	chr4:91946664-92146114	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv10534	chr4:91966600-92009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1831682	chr4:91979094-92114281	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91986000-91990000	Weak transcription	Aorta	Aorta
2	chr4:91986200-91991400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:91986400-91991600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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