Variant report

Variant	rs11729972
Chromosome Location	chr4:91978448-91978449
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10009574	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs10026935	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10446679	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10446698	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10446699	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1381294	1.00[CEU][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1381295	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1461592	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17017997	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17018005	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17018025	0.81[CEU][hapmap]
rs28857631	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28886882	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6532268	0.89[EUR][1000 genomes]
rs6827858	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6831564	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6837092	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6850834	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6853003	0.81[CEU][hapmap]
rs9992513	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879559	chr4:91918870-92152678	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2757943	chr4:91946664-92146114	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759267	chr4:91946664-92146114	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv10534	chr4:91966600-92009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91972600-91985400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:91978000-91978600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:91978400-91979600	Enhancers	HMEC	breast

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