Variant report

Variant	rs10009855
Chromosome Location	chr4:143298190-143298191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10017259	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10017642	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10018876	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11723890	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11726659	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12641576	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1353624	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1391093	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1391094	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1497400	0.94[ASN][1000 genomes]
rs17016001	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1908968	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28546779	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28664218	0.95[EUR][1000 genomes]
rs28844598	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4479787	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4496653	0.81[EUR][1000 genomes]
rs56239324	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62328322	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67102237	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6827918	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6828156	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9308150	0.96[EUR][1000 genomes]
rs977618	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143273400-143299000	Weak transcription	Left Ventricle	heart
2	chr4:143285200-143298400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr4:143289000-143300600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:143289200-143300000	Weak transcription	NH-A	brain
5	chr4:143290200-143298400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:143290400-143305800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:143290400-143322000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:143290800-143300000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:143291200-143299000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:143293400-143302800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr4:143293800-143298400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr4:143294200-143299600	Weak transcription	Right Ventricle	heart
13	chr4:143294200-143300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:143294200-143305400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:143294800-143299000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:143294800-143299400	Weak transcription	Aorta	Aorta
17	chr4:143294800-143299400	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:143295000-143299800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr4:143295200-143305000	Weak transcription	Small Intestine	intestine
20	chr4:143295400-143298600	Weak transcription	HSMMtube	muscle
21	chr4:143295400-143298600	Weak transcription	NHLF	lung
22	chr4:143295400-143299800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:143295400-143300000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:143295400-143301400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr4:143295600-143298200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:143295600-143299200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:143295600-143299200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:143295600-143299600	Weak transcription	Stomach Mucosa	stomach
29	chr4:143296000-143301800	Enhancers	Fetal Heart	heart
30	chr4:143296200-143300600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr4:143296600-143299200	Enhancers	Dnd41	blood
32	chr4:143296600-143299600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:143296600-143310200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:143296800-143298400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:143296800-143298600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr4:143296800-143298600	Weak transcription	Osteobl	bone
37	chr4:143296800-143299000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:143296800-143301000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:143297000-143298200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr4:143297000-143299000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:143297000-143299000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:143297000-143299000	Weak transcription	NHDF-Ad	bronchial
43	chr4:143297000-143299000	Weak transcription	NHEK	skin
44	chr4:143297000-143300400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:143297000-143300400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:143297000-143300400	Weak transcription	Fetal Intestine Small	intestine
47	chr4:143297000-143300800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr4:143297000-143300800	Weak transcription	A549	lung
49	chr4:143297000-143301000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:143297200-143300400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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