Variant report

Variant	rs10010434
Chromosome Location	chr4:2701540-2701541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10012203	1.00[AMR][1000 genomes]
rs10019119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022186	0.83[AFR][1000 genomes]
rs2295497	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs231712	1.00[CEU][hapmap]
rs28536640	1.00[AMR][1000 genomes]
rs28586572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28663181	1.00[AMR][1000 genomes]
rs4690006	1.00[MEX][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948659	chr4:1828867-2815632	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv1003409	chr4:2541224-2724199	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv878443	chr4:2598799-2731331	Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1005116	chr4:2633935-2812340	Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv470001	chr4:2680515-2723531	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv593434	chr4:2688719-2737140	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv878444	chr4:2689449-2861090	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	esv3331205	chr4:2697654-2701852	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv470002	chr4:2701098-2836628	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2638200-2724400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:2673600-2714400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:2679400-2712600	Strong transcription	Fetal Stomach	stomach
4	chr4:2680200-2712800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:2680400-2712200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:2680800-2710200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr4:2681600-2712600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:2682000-2706000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:2682000-2707600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:2682000-2708000	Strong transcription	Dnd41	blood
11	chr4:2682200-2708000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:2682600-2707200	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr4:2682600-2709800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:2682800-2710000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:2683000-2707200	Strong transcription	Placenta	Placenta
16	chr4:2683200-2706400	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:2683200-2710000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:2683400-2710400	Strong transcription	Osteobl	bone
19	chr4:2684000-2706800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:2684000-2707000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:2684400-2706600	Strong transcription	Primary T cells from cord blood	blood
22	chr4:2684600-2710400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:2684600-2710800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:2684800-2707000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:2685000-2710000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr4:2685200-2705400	Strong transcription	Fetal Lung	lung
27	chr4:2685200-2707200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:2685200-2711000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:2685400-2706600	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:2685400-2707200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:2685400-2707200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr4:2685400-2707400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr4:2685400-2708000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:2685400-2708800	Strong transcription	Fetal Thymus	thymus
35	chr4:2685400-2709200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:2685600-2705400	Strong transcription	Brain Substantia Nigra	brain
37	chr4:2685600-2706600	Strong transcription	Brain Anterior Caudate	brain
38	chr4:2685600-2706600	Strong transcription	Lung	lung
39	chr4:2685600-2706800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:2685600-2707200	Strong transcription	Thymus	Thymus
41	chr4:2685600-2707600	Strong transcription	Brain Germinal Matrix	brain
42	chr4:2685600-2712800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:2685800-2706200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr4:2685800-2706400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr4:2686200-2708000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:2687800-2707200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr4:2687800-2715200	Weak transcription	Right Atrium	heart
48	chr4:2688200-2708400	Strong transcription	Fetal Brain Female	brain
49	chr4:2688400-2707200	Strong transcription	Esophagus	oesophagus
50	chr4:2688600-2705400	Strong transcription	Rectal Mucosa Donor 31	rectum

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