Variant report

Variant	rs10012203
Chromosome Location	chr4:2575896-2575897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:2546552..2548542-chr4:2575519..2578316,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10010434	1.00[AMR][1000 genomes]
rs10019119	1.00[AMR][1000 genomes]
rs28536640	1.00[AMR][1000 genomes]
rs28586572	1.00[AMR][1000 genomes]
rs28663181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432548	chr4:1725009-2652494	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv948659	chr4:1828867-2815632	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
3	nsv1003409	chr4:2541224-2724199	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2540000-2585200	Weak transcription	Osteobl	bone
2	chr4:2540400-2576600	Weak transcription	NHLF	lung
3	chr4:2545200-2585000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:2548400-2584200	Weak transcription	A549	lung
5	chr4:2551000-2584400	Weak transcription	NHEK	skin
6	chr4:2559200-2590800	Weak transcription	Fetal Kidney	kidney
7	chr4:2559800-2584800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:2560400-2581400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:2561600-2576000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:2562000-2588800	Weak transcription	NHDF-Ad	bronchial
11	chr4:2562600-2584000	Weak transcription	NH-A	brain
12	chr4:2562800-2584600	Weak transcription	Hela-S3	cervix
13	chr4:2565200-2576200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:2565400-2576800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:2565600-2584800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:2566000-2584400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:2567600-2576000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:2567800-2576000	Weak transcription	Dnd41	blood
19	chr4:2567800-2584600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:2568400-2580800	Weak transcription	Fetal Intestine Large	intestine
21	chr4:2568600-2584200	Weak transcription	Fetal Heart	heart
22	chr4:2569200-2576200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:2570400-2582000	Weak transcription	Placenta	Placenta
24	chr4:2570600-2584800	Weak transcription	HSMM	muscle
25	chr4:2570800-2576200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:2571800-2576200	Enhancers	Brain Anterior Caudate	brain
27	chr4:2571800-2576200	Enhancers	Brain Hippocampus Middle	brain
28	chr4:2571800-2576600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:2572200-2577000	Enhancers	Left Ventricle	heart
30	chr4:2572200-2577000	Enhancers	Right Atrium	heart
31	chr4:2572600-2576000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr4:2572600-2576200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr4:2572600-2584000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:2572800-2576000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr4:2572800-2576200	Weak transcription	Primary B cells from cord blood	blood
36	chr4:2572800-2576400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:2572800-2576800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:2572800-2584000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr4:2573000-2577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:2573000-2577200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr4:2573000-2577200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:2573000-2584000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:2573000-2584000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:2573000-2588400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:2573000-2588800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr4:2573200-2576200	Enhancers	GM12878-XiMat	blood
47	chr4:2573200-2576600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:2573200-2583800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:2573200-2583800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr4:2573200-2584000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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