Variant report

Variant	rs10011297
Chromosome Location	chr4:118717631-118717632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10025641	0.81[AFR][1000 genomes]
rs10030138	0.82[AFR][1000 genomes]
rs11562875	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28626829	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118712200-118719800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:118715800-118717800	Weak transcription	Dnd41	blood
3	chr4:118716000-118717800	Weak transcription	HMEC	breast
4	chr4:118716000-118721800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:118716400-118717800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:118717600-118718400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:118717600-118718800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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