Variant report

Variant	rs10025641
Chromosome Location	chr4:118736002-118736003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006883	1.00[EUR][1000 genomes]
rs10011297	0.81[AFR][1000 genomes]
rs10028949	1.00[EUR][1000 genomes]
rs10029291	1.00[EUR][1000 genomes]
rs10030138	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11562869	1.00[EUR][1000 genomes]
rs11562898	1.00[EUR][1000 genomes]
rs11562899	1.00[EUR][1000 genomes]
rs1459532	1.00[EUR][1000 genomes]
rs17593534	0.80[YRI][hapmap]
rs1870484	1.00[EUR][1000 genomes]
rs28429548	1.00[EUR][1000 genomes]
rs28626829	0.81[AFR][1000 genomes]
rs28654430	1.00[EUR][1000 genomes]
rs28659985	1.00[EUR][1000 genomes]
rs9998986	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118734800-118736200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:118734800-118737600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:118734800-118737600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:118735000-118737000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:118735200-118736400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:118735600-118736400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr4:118735600-118737000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:118735600-118738000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:118735800-118736200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:118735800-118737000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:118735800-118737600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:118736000-118736800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:118736000-118739600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links