Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10006883	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025641	1.00[EUR][1000 genomes]
rs10028949	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10030138	1.00[EUR][1000 genomes]
rs11562868	0.83[AMR][1000 genomes]
rs11562869	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11562898	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11562899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11562924	0.83[AMR][1000 genomes]
rs13328054	0.83[AMR][1000 genomes]
rs1459532	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1870483	1.00[AMR][1000 genomes]
rs1870484	1.00[EUR][1000 genomes]
rs1993647	1.00[AMR][1000 genomes]
rs28429548	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626706	0.83[AMR][1000 genomes]
rs28654430	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28659985	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6843794	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9998986	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118735600-118738000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:118736000-118739600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:118736200-118739800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:118737000-118739600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:118737000-118739600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:118737200-118739400	Enhancers	Dnd41	blood
7	chr4:118737600-118739400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:118737600-118739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search: