Variant report

Variant	rs11562868
Chromosome Location	chr4:118743080-118743081
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10006883	1.00[AMR][1000 genomes]
rs10028949	0.83[AMR][1000 genomes]
rs10029291	0.83[AMR][1000 genomes]
rs11562827	0.83[AMR][1000 genomes]
rs11562869	1.00[AMR][1000 genomes]
rs11562898	1.00[AMR][1000 genomes]
rs11562899	1.00[AMR][1000 genomes]
rs11562924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13328054	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1459532	0.83[AMR][1000 genomes]
rs17049433	1.00[MEX][hapmap]
rs17049440	1.00[YRI][hapmap]
rs1870483	0.83[AMR][1000 genomes]
rs1993647	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs28429548	1.00[AMR][1000 genomes]
rs28576233	0.83[AMR][1000 genomes]
rs28626706	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28654430	1.00[AMR][1000 genomes]
rs28659985	1.00[AMR][1000 genomes]
rs9992828	0.83[AMR][1000 genomes]
rs9998986	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118742000-118743200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:118742000-118743400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:118742200-118743400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:118742400-118743200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr4:118742400-118743200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:118742400-118743200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:118742400-118743400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:118742400-118744000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:118742800-118743400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:118743000-118743600	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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