Variant report

Variant	rs1993647
Chromosome Location	chr4:118751882-118751883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10006883	0.83[AMR][1000 genomes]
rs10028949	1.00[AMR][1000 genomes]
rs10029291	1.00[AMR][1000 genomes]
rs11562868	0.83[AMR][1000 genomes]
rs11562869	0.83[AMR][1000 genomes]
rs11562898	0.83[AMR][1000 genomes]
rs11562899	0.83[AMR][1000 genomes]
rs11562924	0.83[AMR][1000 genomes]
rs13328054	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs1459532	1.00[AMR][1000 genomes]
rs17049433	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1870483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1903181	1.00[EUR][1000 genomes]
rs28429548	0.83[AMR][1000 genomes]
rs28626706	0.83[AMR][1000 genomes]
rs28626829	1.00[EUR][1000 genomes]
rs28654430	0.83[AMR][1000 genomes]
rs28659985	0.83[AMR][1000 genomes]
rs6843794	0.85[AMR][1000 genomes]
rs9998986	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1993647	PFN2	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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